Gentoo Archives: gentoo-commits

From:	"Andrey Kislyuk (weaver)" <weaver@g.o>
To:	gentoo-commits@l.g.o
Subject:	[gentoo-commits] gentoo-x86 commit in sci-biology/lagan/files: lagan-2.0-gcc4.3.patch
Date:	Fri, 27 Feb 2009 00:23:51
Message-Id:	`E1LcqW5-0001yN-Gj@stork.gentoo.org`

1	weaver 09/02/27 00:23:49
2
3	Added: lagan-2.0-gcc4.3.patch
4	Log:
5	Import from Science overlay
6	(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
7
8	Revision Changes Path
9	1.1 sci-biology/lagan/files/lagan-2.0-gcc4.3.patch
10
11	file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/files/lagan-2.0-gcc4.3.patch?rev=1.1&view=markup
12	plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/lagan/files/lagan-2.0-gcc4.3.patch?rev=1.1&content-type=text/plain
13
14	Index: lagan-2.0-gcc4.3.patch
15	===================================================================
16	diff -durr lagan20-orig/src/glocal/score.cpp lagan20/src/glocal/score.cpp
17	--- lagan20-orig/src/glocal/score.cpp 2009-02-04 15:25:57.698333297 +0000
18	+++ lagan20/src/glocal/score.cpp 2009-02-04 15:27:23.894092890 +0000
19	@@ -2,7 +2,7 @@
20	#include<score.h>
21	#include<leftinfluence.h>
22	#include<rightinfluence.h>
23	-#include<fstream.h>
24	+#include<fstream>
25
26	extern vector<class Score*> scoreFunctions[1<<(UPSTRANDBITS+DOWNSTRANDBITS+RELPOSBITS)];
27
28	diff -durr lagan20-orig/src/utils/Glue.cpp lagan20/src/utils/Glue.cpp
29	--- lagan20-orig/src/utils/Glue.cpp 2009-02-04 15:25:57.702333182 +0000
30	+++ lagan20/src/utils/Glue.cpp 2009-02-04 15:27:04.190822654 +0000
31	@@ -1,6 +1,7 @@
32	#include "MultiSequence.h"
33	#include "SafeVector.h"
34	#include "Output.h"
35	+#include <string.h>
36	#include <math.h>
37	#include <assert.h>
38	#include <fstream>