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weaver 09/02/27 00:16:15 |
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Added: metadata.xml repeatmasker-3.2.7.ebuild ChangeLog |
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Log: |
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Import from Science overlay, bug 114096 |
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(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64) |
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Revision Changes Path |
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1.1 sci-biology/repeatmasker/metadata.xml |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/repeatmasker/metadata.xml?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/repeatmasker/metadata.xml?rev=1.1&content-type=text/plain |
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Index: metadata.xml |
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=================================================================== |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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<herd>maintainer-wanted</herd> |
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</pkgmetadata> |
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1.1 sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild?rev=1.1&content-type=text/plain |
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Index: repeatmasker-3.2.7.ebuild |
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=================================================================== |
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# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.7.ebuild,v 1.1 2009/02/27 00:16:15 weaver Exp $ |
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inherit versionator |
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MY_PV=$(replace_all_version_separators '-') |
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DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA" |
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HOMEPAGE="http://repeatmasker.org/" |
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SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz" |
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|
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LICENSE="OSL-2.1" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="" |
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|
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DEPEND="" |
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RDEPEND="sci-biology/phrap |
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sci-biology/trf |
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>=sci-biology/repeatmasker-libraries-20090120" |
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|
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S="${WORKDIR}/RepeatMasker" |
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|
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src_compile() { |
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sed -i -e 's/system( "clear" );//' \ |
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-e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die |
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echo " |
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env |
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/usr/share/${PN} |
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/usr/bin |
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1 |
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/usr/bin |
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Y |
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4" | "${S}/configure" || die "configure failed" |
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sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \ |
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-e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \ |
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-e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \ |
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"${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die |
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} |
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src_install() { |
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dobin DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask |
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dodir /usr/share/${PN}/lib |
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insinto /usr/share/${PN}/lib |
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doins "${S}"/*.pm |
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|
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insinto /usr/share/${PN} |
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doins -r util Matrices Libraries taxonomy.dat |
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keepdir /usr/share/${PN}/Libraries |
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dodoc README INSTALL *.help |
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} |
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1.1 sci-biology/repeatmasker/ChangeLog |
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/repeatmasker/ChangeLog?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/repeatmasker/ChangeLog?rev=1.1&content-type=text/plain |
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Index: ChangeLog |
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=================================================================== |
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# ChangeLog for sci-biology/repeatmasker |
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# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.1 2009/02/27 00:16:15 weaver Exp $ |
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*repeatmasker-3.2.7 (26 Feb 2009) |
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26 Feb 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml, |
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+repeatmasker-3.2.7.ebuild: |
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Import from Science overlay, bug 114096 |
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|
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19 Feb 2009; weaver <weaver@g.o> ChangeLog: |
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Version bump |
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08 Jul 2008; weaver <weaver@g.o> +repeatmasker-3.2.5.ebuild: |
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Version bump |
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27 Apr 2007; Andrey Kislyuk <weaver@×××××××××××.cx> |
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+repeatmasker-3.1.7.ebuild: |
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Mass import from sunrise |
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20 Apr 2007; Andrey Kislyuk <weaver@×××××××××××.cx> +repeatmasker-3.1.7.ebuild, |
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+metadata.xml: |
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new package (bug 114096) |
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