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jlec 12/06/28 16:34:57 |
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|
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Modified: hmmer-3.0-perl-5.16.patch |
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Log: |
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sci-biology/hmmer: Fix patch, screwed VCS tags, #423983 |
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(Portage version: 2.2.0_alpha114/cvs/Linux x86_64) |
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Revision Changes Path |
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1.2 sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch?r1=1.1&r2=1.2 |
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Index: hmmer-3.0-perl-5.16.patch |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- hmmer-3.0-perl-5.16.patch 25 Jun 2012 06:23:12 -0000 1.1 |
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+++ hmmer-3.0-perl-5.16.patch 28 Jun 2012 16:34:57 -0000 1.2 |
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@@ -28,7 +28,7 @@ |
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+++ b/easel/devkit/esl-dependencies |
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@@ -13,8 +13,8 @@ |
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# SRE, Mon Jun 11 11:15:31 2007 |
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- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ |
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+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ |
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|
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-require "getopts.pl" |
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-&Getopts('1afr'); |
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@@ -43,7 +43,7 @@ |
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+++ b/easel/devkit/sqc |
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@@ -205,12 +205,11 @@ |
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# SRE, Tue Aug 6 11:16:39 2002 |
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- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ |
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+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ |
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|
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-require "getopts.pl"; |
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-require "importenv.pl"; |
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@@ -66,13 +66,15 @@ |
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foreach $suffix ("aa".."zz") { |
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$name = "$dir"."esltmp".$suffix.$$; |
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diff --git a/easel/testsuite/coverage_report.pl b/easel/testsuite/coverage_report.pl |
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-index 9c77791..024ed34 100755 |
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+old mode 100755 |
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+new mode 100644 |
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+index 9c77791..024ed34 |
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--- a/easel/testsuite/coverage_report.pl |
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+++ b/easel/testsuite/coverage_report.pl |
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@@ -16,9 +16,9 @@ |
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# |
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# SRE, Thu Mar 1 19:22:57 2007 (Janelia) |
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- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ |
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+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ |
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-require "getopts.pl"; |
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+use Getopt::Std; |
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$have_sloccount = 1; |
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@@ -87,7 +89,7 @@ |
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+++ b/easel/testsuite/driver_report.pl |
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@@ -25,8 +25,8 @@ |
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# SRE, Fri Mar 2 10:01:44 2007 (Janelia) |
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- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ |
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+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ |
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|
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-require "getopts.pl"; |
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-&Getopts('c'); |
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@@ -97,13 +99,15 @@ |
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|
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if ($ENV{'CC'} ne "") { $CC = $ENV{'CC'}; } else { $CC = "gcc"; } |
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diff --git a/easel/testsuite/valgrind_report.pl b/easel/testsuite/valgrind_report.pl |
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-index 186a392..07026a0 100755 |
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+old mode 100755 |
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+new mode 100644 |
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+index 186a392..07026a0 |
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--- a/easel/testsuite/valgrind_report.pl |
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+++ b/easel/testsuite/valgrind_report.pl |
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@@ -10,8 +10,8 @@ |
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# |
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# SRE, Fri Mar 2 08:37:48 2007 [Janelia] |
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- # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ |
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+ # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ |
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-require "getopts.pl"; |
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-&Getopts('c'); |
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+use Getopt::Std; |
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