From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/wgs-assembler: metadata.xml ChangeLog wgs-assembler-5.3.ebuild |
Date: | Fri, 05 Jun 2009 15:16:08 |
Message-Id: | E1MCb9J-0004Xw-Fj@stork.gentoo.org |
1 | weaver 09/06/05 15:16:05 |
2 | |
3 | Added: metadata.xml ChangeLog wgs-assembler-5.3.ebuild |
4 | Log: |
5 | New package, ebuild written by me |
6 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
7 | |
8 | Revision Changes Path |
9 | 1.1 sci-biology/wgs-assembler/metadata.xml |
10 | |
11 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/metadata.xml?rev=1.1&view=markup |
12 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/metadata.xml?rev=1.1&content-type=text/plain |
13 | |
14 | Index: metadata.xml |
15 | =================================================================== |
16 | <?xml version="1.0" encoding="UTF-8"?> |
17 | <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
18 | <pkgmetadata> |
19 | <maintainer> |
20 | <email>weaver@g.o</email> |
21 | <name>Andrey Kislyuk</name> |
22 | </maintainer> |
23 | <herd>sci-biology</herd> |
24 | </pkgmetadata> |
25 | |
26 | |
27 | |
28 | 1.1 sci-biology/wgs-assembler/ChangeLog |
29 | |
30 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/ChangeLog?rev=1.1&view=markup |
31 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/ChangeLog?rev=1.1&content-type=text/plain |
32 | |
33 | Index: ChangeLog |
34 | =================================================================== |
35 | # ChangeLog for sci-biology/wgs-assembler |
36 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
37 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/ChangeLog,v 1.1 2009/06/05 15:16:05 weaver Exp $ |
38 | |
39 | *wgs-assembler-5.3 (05 Jun 2009) |
40 | |
41 | 05 Jun 2009; Andrey Kislyuk <weaver@g.o> +wgs-assembler-5.3.ebuild: |
42 | New package, ebuild written by me |
43 | |
44 | |
45 | |
46 | |
47 | 1.1 sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild |
48 | |
49 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild?rev=1.1&view=markup |
50 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild?rev=1.1&content-type=text/plain |
51 | |
52 | Index: wgs-assembler-5.3.ebuild |
53 | =================================================================== |
54 | # Copyright 1999-2009 Gentoo Foundation |
55 | # Distributed under the terms of the GNU General Public License v2 |
56 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild,v 1.1 2009/06/05 15:16:05 weaver Exp $ |
57 | |
58 | EAPI="2" |
59 | |
60 | inherit eutils |
61 | |
62 | DESCRIPTION="Whole-genome shotgun assembler based on the Celera Assembler" |
63 | HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/" |
64 | SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2" |
65 | |
66 | LICENSE="GPL-2" |
67 | SLOT="0" |
68 | IUSE="" |
69 | KEYWORDS="~x86 ~amd64" |
70 | |
71 | DEPEND="x11-libs/libXt" |
72 | RDEPEND="${DEPEND} |
73 | app-shells/tcsh |
74 | dev-perl/Log-Log4perl" |
75 | |
76 | S="${WORKDIR}/wgs-${PV}" |
77 | |
78 | src_compile() { |
79 | emake -C src -j1 SITE_NAME=LOCAL || die |
80 | } |
81 | |
82 | src_install() { |
83 | OSTYPE=$(uname) |
84 | MACHTYPE=$(uname -m) |
85 | MACHTYPE=${MACHTYPE/x86_64/amd64} |
86 | MY_S="${OSTYPE}-${MACHTYPE}" |
87 | sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die |
88 | |
89 | sed -i '/sub getBinDirectory/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die |
90 | sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die |
91 | insinto /usr/share/${PN} |
92 | doins -r ${MY_S}/bin/spec |
93 | insinto /usr/share/${PN}/lib |
94 | doins -r ${MY_S}/bin/TIGR || die |
95 | rm -rf ${MY_S}/bin/{TIGR,spec} |
96 | dobin ${MY_S}/bin/* || die |
97 | dolib.a ${MY_S}/lib/* || die |
98 | dodoc README |
99 | } |