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commit: 1799fb910883f958fd725da74828ae7becbc8e67 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Tue Aug 31 09:20:00 2021 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Tue Aug 31 09:20:00 2021 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1799fb91 |
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|
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sci-biology/prot4EST: remove last-rited pack |
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|
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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profiles/package.mask | 1 - |
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sci-biology/prot4EST/metadata.xml | 12 ---------- |
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sci-biology/prot4EST/prot4EST-3.1b.ebuild | 38 ------------------------------- |
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3 files changed, 51 deletions(-) |
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|
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diff --git a/profiles/package.mask b/profiles/package.mask |
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index 83a94e897..f8e1e4d32 100644 |
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--- a/profiles/package.mask |
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+++ b/profiles/package.mask |
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@@ -37,7 +37,6 @@ |
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# Bug #798015, removal in 30 days. |
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# Perhaps these packages work with the newer ncbi-tools++? If anyone is actively |
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# using these packages please open a bug report |
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-sci-biology/prot4EST |
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sci-biology/seqclean |
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sci-chemistry/talosn |
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# revdep of seqclean |
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|
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diff --git a/sci-biology/prot4EST/metadata.xml b/sci-biology/prot4EST/metadata.xml |
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deleted file mode 100644 |
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index 138cb7705..000000000 |
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--- a/sci-biology/prot4EST/metadata.xml |
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+++ /dev/null |
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@@ -1,12 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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-</pkgmetadata> |
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|
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diff --git a/sci-biology/prot4EST/prot4EST-3.1b.ebuild b/sci-biology/prot4EST/prot4EST-3.1b.ebuild |
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deleted file mode 100644 |
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index 9f8fb4302..000000000 |
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--- a/sci-biology/prot4EST/prot4EST-3.1b.ebuild |
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+++ /dev/null |
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@@ -1,38 +0,0 @@ |
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-# Copyright 1999-2021 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=7 |
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- |
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-inherit perl-module |
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- |
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-DESCRIPTION="Predict proteins from EST sequences overcoming frameshifts" |
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-HOMEPAGE="http://www.compsysbio.org/ |
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- http://www.biomedcentral.com/1471-2105/5/187" |
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-SRC_URI="http://www.compsysbio.org/lab/james/prot4EST_rl3.1b.tgz" |
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- |
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-LICENSE="GPL-1" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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- |
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-DEPEND=" |
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- sci-biology/emboss |
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- sci-biology/estscan |
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- sci-biology/bioperl |
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- sci-biology/ncbi-tools |
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- virtual/perl-File-Path |
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- virtual/perl-Getopt-Long |
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- dev-perl/Statistics-Descriptive |
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- dev-perl/Tie-IxHash |
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- dev-perl/Algorithm-Loops" |
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- # sci-biology/DECODER |
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-RDEPEND="${DEPEND}" |
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- |
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-S="${WORKDIR}/p4e3.1b" |
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- |
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-src_install(){ |
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- mydoc="README INSTALL" |
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- perl-module_src_install |
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- mv bin/prot4EST*.pl bin/prot4EST.pl |
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- dobin bin/*.pl |
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- dodoc doc/* |
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-} |
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