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commit: 8d68b0e9000600e9cfce3d6cee7b4779929f3840 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Sun Jan 29 18:29:24 2017 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Sun Jan 29 18:29:24 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8d68b0e9 |
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sci-biology/quast: updating to a current version, still incomplete |
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This will need much more work to unbundle all the required stuff. |
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|
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Package-Manager: Portage-2.3.3, Repoman-2.3.1 |
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|
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sci-biology/quast/{quast-2.3.ebuild => quast-4.4.ebuild} | 14 ++++++++++---- |
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1 file changed, 10 insertions(+), 4 deletions(-) |
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diff --git a/sci-biology/quast/quast-2.3.ebuild b/sci-biology/quast/quast-4.4.ebuild |
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similarity index 67% |
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rename from sci-biology/quast/quast-2.3.ebuild |
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rename to sci-biology/quast/quast-4.4.ebuild |
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index cc33280..3e992ba 100644 |
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--- a/sci-biology/quast/quast-2.3.ebuild |
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+++ b/sci-biology/quast/quast-4.4.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2017 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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@@ -23,7 +23,11 @@ DEPEND=" |
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sci-biology/glimmerhmm" |
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# sci-biology/GAGE |
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# sci-biology/GeneMarkS |
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-# sci-biology/MetaGeneMark" |
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+# sci-biology/GeneMarkES |
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+# sci-biology/MetaGeneMark |
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+# sci-biology/ncbi-tools++ |
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+# |
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+# comes with bundled executables in ./quast_libs |
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|
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# the above packages need to be created first |
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|
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@@ -32,8 +36,10 @@ RDEPEND="${DEPEND}" |
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src_install(){ |
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python_foreach_impl python_newscript quast.py quast |
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python_foreach_impl python_newscript metaquast.py metaquast |
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+ python_foreach_impl python_newscript icarus.py icarus |
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|
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- dodoc manual.html CHANGES |
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+ dodoc manual.html |
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|
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- # TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH |
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+ # TODO: install quast_libs/ subdirectory contents into some PATH and PYTHON_PATH |
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+ # TODO: unbundle bundled executables |
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} |
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