From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/bioperl: ChangeLog bioperl-1.6.1.ebuild |
Date: | Thu, 01 Oct 2009 18:39:10 |
Message-Id: | E1MtQYW-0007uP-NV@stork.gentoo.org |
1 | weaver 09/10/01 18:39:08 |
2 | |
3 | Modified: ChangeLog |
4 | Added: bioperl-1.6.1.ebuild |
5 | Log: |
6 | Version bump |
7 | (Portage version: 2.2_rc30/cvs/Linux x86_64, RepoMan options: --force) |
8 | |
9 | Revision Changes Path |
10 | 1.44 sci-biology/bioperl/ChangeLog |
11 | |
12 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/ChangeLog?rev=1.44&view=markup |
13 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/ChangeLog?rev=1.44&content-type=text/plain |
14 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/ChangeLog?r1=1.43&r2=1.44 |
15 | |
16 | Index: ChangeLog |
17 | =================================================================== |
18 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v |
19 | retrieving revision 1.43 |
20 | retrieving revision 1.44 |
21 | diff -u -r1.43 -r1.44 |
22 | --- ChangeLog 11 Jun 2009 19:35:12 -0000 1.43 |
23 | +++ ChangeLog 1 Oct 2009 18:39:08 -0000 1.44 |
24 | @@ -1,6 +1,11 @@ |
25 | # ChangeLog for sci-biology/bioperl |
26 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
27 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.43 2009/06/11 19:35:12 maekke Exp $ |
28 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.44 2009/10/01 18:39:08 weaver Exp $ |
29 | + |
30 | +*bioperl-1.6.1 (01 Oct 2009) |
31 | + |
32 | + 01 Oct 2009; Andrey Kislyuk <weaver@g.o> +bioperl-1.6.1.ebuild: |
33 | + Version bump |
34 | |
35 | 11 Jun 2009; Markus Meier <maekke@g.o> bioperl-1.6.0-r2.ebuild: |
36 | amd64 stable, bug #270585 |
37 | |
38 | |
39 | |
40 | 1.1 sci-biology/bioperl/bioperl-1.6.1.ebuild |
41 | |
42 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild?rev=1.1&view=markup |
43 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild?rev=1.1&content-type=text/plain |
44 | |
45 | Index: bioperl-1.6.1.ebuild |
46 | =================================================================== |
47 | # Copyright 1999-2009 Gentoo Foundation |
48 | # Distributed under the terms of the GNU General Public License v2 |
49 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 1.1 2009/10/01 18:39:08 weaver Exp $ |
50 | |
51 | EAPI="2" |
52 | |
53 | inherit perl-module |
54 | |
55 | SUBPROJECTS="+db +network +run" |
56 | MIN_PV="1.6" |
57 | |
58 | DESCRIPTION="Perl tools for bioinformatics - Core modules" |
59 | HOMEPAGE="http://www.bioperl.org/" |
60 | SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2" |
61 | |
62 | LICENSE="Artistic GPL-2" |
63 | SLOT="0" |
64 | KEYWORDS="~amd64 ~x86" |
65 | IUSE="-minimal graphviz sqlite ${SUBPROJECTS}" |
66 | |
67 | CDEPEND="dev-perl/Data-Stag |
68 | dev-perl/libwww-perl |
69 | !minimal? ( |
70 | dev-perl/Ace |
71 | dev-perl/Spreadsheet-ParseExcel |
72 | dev-perl/Spreadsheet-WriteExcel |
73 | >=dev-perl/XML-SAX-0.15 |
74 | dev-perl/Graph |
75 | dev-perl/SOAP-Lite |
76 | dev-perl/Array-Compare |
77 | dev-perl/SVG |
78 | dev-perl/XML-Simple |
79 | dev-perl/XML-Parser |
80 | dev-perl/XML-Twig |
81 | >=dev-perl/HTML-Parser-3.60 |
82 | >=dev-perl/XML-Writer-0.4 |
83 | dev-perl/Clone |
84 | dev-perl/XML-DOM |
85 | dev-perl/set-scalar |
86 | dev-perl/XML-XPath |
87 | dev-perl/XML-DOM-XPath |
88 | dev-perl/Algorithm-Munkres |
89 | dev-perl/Data-Stag |
90 | dev-perl/Math-Random |
91 | dev-perl/PostScript |
92 | dev-perl/Convert-Binary-C |
93 | dev-perl/SVG-Graph |
94 | ) |
95 | graphviz? ( dev-perl/GraphViz[perl] ) |
96 | sqlite? ( dev-perl/DBD-SQLite )" |
97 | DEPEND="virtual/perl-Module-Build |
98 | ${CDEPEND}" |
99 | # In perl-overlay |
100 | # >=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?) |
101 | # >=perl-CPAN/perl-CPAN-1.81 |
102 | RDEPEND="${CDEPEND}" |
103 | PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) |
104 | db? ( >=sci-biology/bioperl-db-${MIN_PV} ) |
105 | network? ( >=sci-biology/bioperl-network-${MIN_PV} ) |
106 | run? ( >=sci-biology/bioperl-run-${MIN_PV} )" |
107 | |
108 | S="${WORKDIR}/BioPerl-${PV}" |
109 | |
110 | src_configure() { |
111 | sed -i -e '/add_post_install_script.*symlink_script.pl/d' \ |
112 | -e "/'CPAN' *=> *1.81/d" \ |
113 | -e "/'ExtUtils::Manifest' *=> *1.52/d" "${S}/Build.PL" || die |
114 | |
115 | if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi |
116 | perl-module_src_configure |
117 | } |
118 | |
119 | src_install() { |
120 | mydoc="AUTHORS BUGS FAQ" |
121 | perl-module_src_install |
122 | } |