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weaver 09/10/29 02:16:25 |
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|
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Modified: ChangeLog |
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Added: mummer-3.22.ebuild |
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Log: |
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Version bump |
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(Portage version: 2.2_rc30/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.10 sci-biology/mummer/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/ChangeLog?rev=1.10&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/ChangeLog?rev=1.10&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/ChangeLog?r1=1.9&r2=1.10 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v |
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retrieving revision 1.9 |
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retrieving revision 1.10 |
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diff -u -r1.9 -r1.10 |
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--- ChangeLog 5 Aug 2009 21:12:52 -0000 1.9 |
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+++ ChangeLog 29 Oct 2009 02:16:25 -0000 1.10 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for sci-biology/mummer |
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# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.9 2009/08/05 21:12:52 maekke Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.10 2009/10/29 02:16:25 weaver Exp $ |
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+ |
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+*mummer-3.22 (28 Oct 2009) |
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+ |
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+ 28 Oct 2009; Andrey Kislyuk <weaver@g.o> +mummer-3.22.ebuild: |
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+ Version bump |
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|
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05 Aug 2009; Markus Meier <maekke@g.o> mummer-3.21.ebuild: |
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x86 stable, bug #279350 |
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|
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|
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|
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1.1 sci-biology/mummer/mummer-3.22.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/mummer-3.22.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mummer/mummer-3.22.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: mummer-3.22.ebuild |
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=================================================================== |
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# Copyright 1999-2009 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.22.ebuild,v 1.1 2009/10/29 02:16:25 weaver Exp $ |
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|
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inherit eutils |
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|
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DESCRIPTION="A rapid whole genome aligner" |
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HOMEPAGE="http://mummer.sourceforge.net/" |
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SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" |
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|
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LICENSE="Artistic" |
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SLOT="0" |
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IUSE="doc" |
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KEYWORDS="~amd64 ~x86" |
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|
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DEPEND="" |
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RDEPEND="app-shells/tcsh" |
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|
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S="${WORKDIR}/MUMmer${PV}" |
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|
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src_unpack() { |
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unpack ${A} |
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# Warning: package uses CPPFLAGS on c as well as cpp, despite the name |
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sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ |
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-e 's/LDFLAGS =$//' "${S}/Makefile" || die |
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} |
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|
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src_compile() { |
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emake || die |
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|
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sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ |
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-e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ |
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-e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
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-e 's|\(set bindir = \).*|\1/usr/bin|' \ |
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-e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ |
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-e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
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scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die |
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mv annotate mummer-annotate || die |
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sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die |
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} |
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|
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src_install() { |
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dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die |
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|
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insinto /usr/share/${PN}/scripts |
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doins scripts/{*.awk,*.csh,*.pl} || die |
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insinto /usr/share/${PN}/lib |
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doins scripts/Foundation.pm || die |
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|
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dodoc ACKNOWLEDGEMENTS ChangeLog README |
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insinto /usr/share/doc/${PF} |
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use doc && doins -r docs |
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} |
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