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commit: 01a5062038a8bc55319bb81222c9f1bcd369cb20 |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Fri Feb 3 16:27:18 2017 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Sun Feb 5 05:17:59 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=01a50620 |
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|
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Shorten all DESCRIPTION to <80 chars |
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|
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/beagle/beagle-4.0.ebuild | 2 +- |
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sci-biology/bismark/bismark-0.13.0.ebuild | 2 +- |
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sci-biology/blue/blue-1.1.2.ebuild | 2 +- |
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sci-biology/blue/blue-1.1.3.ebuild | 2 +- |
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sci-biology/cdbfasta/cdbfasta-0.1.ebuild | 2 +- |
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sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild | 2 +- |
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sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild | 2 +- |
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sci-biology/fastqc/fastqc-0.11.3.ebuild | 2 +- |
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sci-biology/generecon/generecon-1.2.1-r1.ebuild | 2 +- |
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sci-biology/genometools/genometools-1.5.7.ebuild | 2 +- |
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sci-biology/genseed/genseed-1.0.22.ebuild | 2 +- |
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sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild | 2 +- |
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sci-biology/kmergenie/kmergenie-1.6971.ebuild | 2 +- |
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sci-biology/lastz/lastz-1.03.66.ebuild | 2 +- |
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sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 2 +- |
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sci-biology/mgblast/mgblast-0.1.ebuild | 2 +- |
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sci-biology/mira/mira-4.9.5.ebuild | 2 +- |
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sci-biology/ngsview/ngsview-0.91.ebuild | 2 +- |
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sci-biology/perlprimer/perlprimer-1.1.21.ebuild | 2 +- |
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sci-biology/pileup/pileup-0.6.ebuild | 2 +- |
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sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild | 2 +- |
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sci-biology/samstat/samstat-20130708.ebuild | 2 +- |
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sci-biology/samtools/samtools-1.0-r2.ebuild | 2 +- |
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sci-biology/samtools/samtools-1.1-r1.ebuild | 2 +- |
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sci-biology/samtools/samtools-1.2-r1.ebuild | 2 +- |
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sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild | 2 +- |
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sci-biology/sclust/sclust-0.1.ebuild | 2 +- |
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sci-biology/sequin/sequin-20121202.ebuild | 2 +- |
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sci-biology/sgp2/sgp2-1.1.ebuild | 2 +- |
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sci-biology/sickle/sickle-1.33.ebuild | 2 +- |
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sci-biology/sickle/sickle-9999.ebuild | 2 +- |
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sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild | 2 +- |
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sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild | 2 +- |
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sci-biology/stacks/stacks-1.44.ebuild | 2 +- |
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sci-biology/subread/subread-1.4.6.ebuild | 2 +- |
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sci-biology/symap/symap-4.0.ebuild | 2 +- |
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sci-biology/tgicl/tgicl-2.1.ebuild | 2 +- |
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sci-biology/trowel/trowel-0.1.4.1.ebuild | 2 +- |
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sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild | 2 +- |
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sci-chemistry/chooch/chooch-5.0.2-r1.ebuild | 2 +- |
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sci-chemistry/concoord/concoord-2.1.2.ebuild | 2 +- |
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sci-chemistry/concoord/concoord-2.1.ebuild | 2 +- |
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sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild | 2 +- |
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sci-chemistry/modelfree/modelfree-4.20.ebuild | 2 +- |
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sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild | 2 +- |
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sci-chemistry/redcat/redcat-3.ebuild | 2 +- |
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sci-chemistry/rosetta/rosetta-3.4.ebuild | 2 +- |
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sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild | 2 +- |
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sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild | 2 +- |
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sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild | 2 +- |
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sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild | 2 +- |
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sci-libs/asl/asl-0.1.7.ebuild | 2 +- |
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sci-libs/asl/asl-9999.ebuild | 2 +- |
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sci-libs/ipp/ipp-8.2.2.187-r1.ebuild | 2 +- |
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sci-mathematics/apron/apron-0.9.10-r1.ebuild | 2 +- |
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sci-misc/elmer-gui/elmer-gui-9999.ebuild | 2 +- |
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sci-misc/mitlm/mitlm-0.4.1.ebuild | 2 +- |
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sci-physics/abinit/abinit-7.10.4.ebuild | 2 +- |
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sci-physics/abinit/abinit-7.4.2-r1.ebuild | 2 +- |
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sci-physics/abinit/abinit-7.6.4-r1.ebuild | 2 +- |
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sci-physics/mc-tester/mc-tester-1.25.0.ebuild | 2 +- |
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sci-physics/openmx/openmx-3.6.ebuild | 2 +- |
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sci-physics/openmx/openmx-3.7.8.ebuild | 2 +- |
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63 files changed, 63 insertions(+), 63 deletions(-) |
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|
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diff --git a/sci-biology/beagle/beagle-4.0.ebuild b/sci-biology/beagle/beagle-4.0.ebuild |
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index 70caec7..c370265 100644 |
79 |
--- a/sci-biology/beagle/beagle-4.0.ebuild |
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+++ b/sci-biology/beagle/beagle-4.0.ebuild |
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@@ -6,7 +6,7 @@ EAPI=5 |
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|
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inherit java-pkg-2 java-ant-2 |
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|
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-DESCRIPTION="Genotype calling/phasing, imputation of ungenotyped markers, identity-by-descent segment detection" |
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+DESCRIPTION="Genotype calling/phasing, imputation of ungenotyped markers" |
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HOMEPAGE="http://faculty.washington.edu/browning/beagle/beagle.html" |
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SRC_URI="http://faculty.washington.edu/browning/beagle/beagle.r1399.src.zip |
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http://faculty.washington.edu/browning/beagle/beagle.03Mar15.pdf |
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|
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diff --git a/sci-biology/bismark/bismark-0.13.0.ebuild b/sci-biology/bismark/bismark-0.13.0.ebuild |
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index 1f6616e..64f06c0 100644 |
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--- a/sci-biology/bismark/bismark-0.13.0.ebuild |
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+++ b/sci-biology/bismark/bismark-0.13.0.ebuild |
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@@ -6,7 +6,7 @@ EAPI=5 |
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|
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inherit toolchain-funcs |
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|
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-DESCRIPTION="A tool to map bisulfite converted sequence reads and determine cytosine methylation states" |
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+DESCRIPTION="Map bisulfite converted sequence reads and determine cytosine methylation states" |
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HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/bismark/" |
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SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/${PN}/${PN}_v${PV}.tar.gz" |
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|
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|
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diff --git a/sci-biology/blue/blue-1.1.2.ebuild b/sci-biology/blue/blue-1.1.2.ebuild |
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index 4591d3c..efb3480 100644 |
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--- a/sci-biology/blue/blue-1.1.2.ebuild |
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+++ b/sci-biology/blue/blue-1.1.2.ebuild |
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@@ -4,7 +4,7 @@ |
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|
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EAPI=5 |
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|
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-DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix insertions and deletions" |
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+DESCRIPTION="Error corrector for Illummina and Roche/454, inculding insertions and deletions" |
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HOMEPAGE="http://www.bioinformatics.csiro.au/blue" |
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SRC_URI=" |
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http://www.bioinformatics.csiro.au/public/files/Linux-${PV}.tar.gz -> ${P}.tar.gz |
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|
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diff --git a/sci-biology/blue/blue-1.1.3.ebuild b/sci-biology/blue/blue-1.1.3.ebuild |
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index 4591d3c..59561cc 100644 |
121 |
--- a/sci-biology/blue/blue-1.1.3.ebuild |
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+++ b/sci-biology/blue/blue-1.1.3.ebuild |
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@@ -4,7 +4,7 @@ |
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|
125 |
EAPI=5 |
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|
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-DESCRIPTION="Error corrector for Illummina and Roche/454 able to also fix insertions and deletions" |
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+DESCRIPTION="Error corrector for Illummina and Roche/454, including insertions and deletions" |
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HOMEPAGE="http://www.bioinformatics.csiro.au/blue" |
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SRC_URI=" |
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http://www.bioinformatics.csiro.au/public/files/Linux-${PV}.tar.gz -> ${P}.tar.gz |
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|
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diff --git a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild |
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index 06cc243..1dcd7f6 100644 |
135 |
--- a/sci-biology/cdbfasta/cdbfasta-0.1.ebuild |
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+++ b/sci-biology/cdbfasta/cdbfasta-0.1.ebuild |
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@@ -4,7 +4,7 @@ |
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|
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EAPI=5 |
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|
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-DESCRIPTION="FASTA record indexing/retrievieng utility, a part of TIGR Gene Indices project tools" |
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+DESCRIPTION="FASTA record indexing/retrievieng utility" |
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HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software" |
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SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/cdbfasta/cdbfasta.tar.gz" |
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|
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|
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diff --git a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild |
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index 10f36ce..c582526 100644 |
149 |
--- a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild |
150 |
+++ b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild |
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@@ -7,7 +7,7 @@ EAPI=5 |
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PERL_EXPORT_PHASE_FUNCTIONS=no |
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inherit perl-module eutils toolchain-funcs |
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|
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-DESCRIPTION="Assemble and compare genotype variants (variant discovery without reference sequence)" |
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+DESCRIPTION="Genotype variant discovery without reference sequence" |
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HOMEPAGE="http://cortexassembler.sourceforge.net/index_cortex_var.html" |
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SRC_URI="http://sourceforge.net/projects/cortexassembler/files/cortex_var/latest/CORTEX_release_v1.0.5.21.tgz |
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http://cortexassembler.sourceforge.net/cortex_var_user_manual.pdf" |
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|
161 |
diff --git a/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild b/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild |
162 |
index 1346fd2..fa60ef7 100644 |
163 |
--- a/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild |
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+++ b/sci-biology/exomiser-bin/exomiser-bin-7.2.1.ebuild |
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@@ -4,7 +4,7 @@ |
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|
167 |
EAPI=5 |
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|
169 |
-DESCRIPTION="Annotate VCF files and prioritize genome/exome mutations (Jannovar, UCSC KnownGenes, hg19)" |
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+DESCRIPTION="Annotate VCF files and prioritize genome/exome mutations" |
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HOMEPAGE="http://www.sanger.ac.uk/science/tools/exomiser" |
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SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${PV}-distribution.zip |
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ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/GenomiserREADME -> ${PN}.README |
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|
175 |
diff --git a/sci-biology/fastqc/fastqc-0.11.3.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild |
176 |
index 64b41ab..f558a75 100644 |
177 |
--- a/sci-biology/fastqc/fastqc-0.11.3.ebuild |
178 |
+++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild |
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@@ -6,7 +6,7 @@ EAPI=5 |
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|
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inherit java-pkg-2 eutils java-ant-2 |
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|
183 |
-DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files" |
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+DESCRIPTION="Quality control FASTA/FASTQ sequence files" |
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HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" |
186 |
SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip" |
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|
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|
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diff --git a/sci-biology/generecon/generecon-1.2.1-r1.ebuild b/sci-biology/generecon/generecon-1.2.1-r1.ebuild |
190 |
index d3c8acb..81c81ba 100644 |
191 |
--- a/sci-biology/generecon/generecon-1.2.1-r1.ebuild |
192 |
+++ b/sci-biology/generecon/generecon-1.2.1-r1.ebuild |
193 |
@@ -6,7 +6,7 @@ EAPI=5 |
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|
195 |
inherit autotools eutils |
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|
197 |
-DESCRIPTION="Disequilibrium gene mapping based on coalescent theory using Bayesian Markov Chain MC methods" |
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+DESCRIPTION="Disequilibrium gene mapping based on coalescent theory using Bayesian MC methods" |
199 |
HOMEPAGE="http://www.daimi.au.dk/~mailund/GeneRecon/" |
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SRC_URI="http://www.daimi.au.dk/~mailund/GeneRecon/download/${P}.tar.gz" |
201 |
|
202 |
|
203 |
diff --git a/sci-biology/genometools/genometools-1.5.7.ebuild b/sci-biology/genometools/genometools-1.5.7.ebuild |
204 |
index b62bfe1..2a78a5c 100644 |
205 |
--- a/sci-biology/genometools/genometools-1.5.7.ebuild |
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+++ b/sci-biology/genometools/genometools-1.5.7.ebuild |
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@@ -4,7 +4,7 @@ |
208 |
|
209 |
EAPI=5 |
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|
211 |
-DESCRIPTION="A collection of tools for bioinformatics (notably Tallymer, Readjoiner, gff3validator)" |
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+DESCRIPTION="Tools for bioinformatics (notably Tallymer, Readjoiner, gff3validator)" |
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HOMEPAGE="http://genometools.org" |
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SRC_URI="http://genometools.org/pub/${P}.tar.gz" |
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|
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|
217 |
diff --git a/sci-biology/genseed/genseed-1.0.22.ebuild b/sci-biology/genseed/genseed-1.0.22.ebuild |
218 |
index 92b1812..70919b8 100644 |
219 |
--- a/sci-biology/genseed/genseed-1.0.22.ebuild |
220 |
+++ b/sci-biology/genseed/genseed-1.0.22.ebuild |
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@@ -4,7 +4,7 @@ |
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|
223 |
EAPI=5 |
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|
225 |
-DESCRIPTION="Seed-driven progressive assembly program using legacy NCBI blast, CAP3, and optionally cross_match" |
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+DESCRIPTION="Seed-driven progressive assembly program" |
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HOMEPAGE="http://www.coccidia.icb.usp.br/genseed/" |
228 |
SRC_URI="http://www.coccidia.icb.usp.br/genseed/download/${P}.tar.gz" |
229 |
|
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|
231 |
diff --git a/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild b/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild |
232 |
index ba64ab2..0130578 100644 |
233 |
--- a/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild |
234 |
+++ b/sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild |
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@@ -4,7 +4,7 @@ |
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|
237 |
EAPI=5 |
238 |
|
239 |
-DESCRIPTION="Detection of structural variation breakpoints in unique and duplicated genomic regions" |
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+DESCRIPTION="Detection of structural variation breakpoints" |
241 |
HOMEPAGE="http://code.google.com/p/hydra-sv/" |
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SRC_URI="http://hydra-sv.googlecode.com/files/Hydra.v${PV}.tar.gz" |
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|
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|
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diff --git a/sci-biology/kmergenie/kmergenie-1.6971.ebuild b/sci-biology/kmergenie/kmergenie-1.6971.ebuild |
246 |
index ef96c0a..6762ecd 100644 |
247 |
--- a/sci-biology/kmergenie/kmergenie-1.6971.ebuild |
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+++ b/sci-biology/kmergenie/kmergenie-1.6971.ebuild |
249 |
@@ -8,7 +8,7 @@ inherit eutils |
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|
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PYTHON_COMPAT=( python{2_6,2_7} ) |
252 |
|
253 |
-DESCRIPTION="Estimate best k-mer length to be used in novo assemblies (default set during compilation is 121)" |
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+DESCRIPTION="Estimate best k-mer length to be used in novo assemblies" |
255 |
HOMEPAGE="http://kmergenie.bx.psu.edu/" |
256 |
SRC_URI="http://kmergenie.bx.psu.edu/"${P}".tar.gz" |
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|
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|
259 |
diff --git a/sci-biology/lastz/lastz-1.03.66.ebuild b/sci-biology/lastz/lastz-1.03.66.ebuild |
260 |
index a3b2ae1..99d9c22 100644 |
261 |
--- a/sci-biology/lastz/lastz-1.03.66.ebuild |
262 |
+++ b/sci-biology/lastz/lastz-1.03.66.ebuild |
263 |
@@ -6,7 +6,7 @@ EAPI=5 |
264 |
|
265 |
inherit eutils flag-o-matic toolchain-funcs |
266 |
|
267 |
-DESCRIPTION="A pairwise DNA sequence aligner (also chromosome to chromosome), a BLASTZ replacement" |
268 |
+DESCRIPTION="A pairwise DNA sequence aligner, a BLASTZ replacement" |
269 |
HOMEPAGE="http://www.bx.psu.edu/~rsharris/lastz/" |
270 |
SRC_URI="http://www.bx.psu.edu/~rsharris/lastz/newer/${P}.tar.gz" |
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|
272 |
|
273 |
diff --git a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild |
274 |
index 5701bb8..59c098d 100644 |
275 |
--- a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild |
276 |
+++ b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild |
277 |
@@ -4,7 +4,7 @@ |
278 |
|
279 |
EAPI=5 |
280 |
|
281 |
-DESCRIPTION="genome annotation tool: view, modify, and store annotation for prokaryotic and eukaryotic genomes" |
282 |
+DESCRIPTION="Genome annotation tool" |
283 |
HOMEPAGE="http://manatee.sourceforge.net/jcvi/downloads.shtml" |
284 |
SRC_URI="http://downloads.sourceforge.net/project/manatee/manatee/manatee-2.4.3/manatee-2.4.3.tgz" |
285 |
|
286 |
|
287 |
diff --git a/sci-biology/mgblast/mgblast-0.1.ebuild b/sci-biology/mgblast/mgblast-0.1.ebuild |
288 |
index 0a95c2e..0114713 100644 |
289 |
--- a/sci-biology/mgblast/mgblast-0.1.ebuild |
290 |
+++ b/sci-biology/mgblast/mgblast-0.1.ebuild |
291 |
@@ -4,7 +4,7 @@ |
292 |
|
293 |
EAPI=5 |
294 |
|
295 |
-DESCRIPTION="Customized version of megablast from TIGR Gene Indices project used by tgicl and gicl utilities" |
296 |
+DESCRIPTION="Customized version of megablast from TIGR Gene Indices project" |
297 |
HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/" |
298 |
SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/mgblast.tar.gz" |
299 |
|
300 |
|
301 |
diff --git a/sci-biology/mira/mira-4.9.5.ebuild b/sci-biology/mira/mira-4.9.5.ebuild |
302 |
index c77a962..268d607 100644 |
303 |
--- a/sci-biology/mira/mira-4.9.5.ebuild |
304 |
+++ b/sci-biology/mira/mira-4.9.5.ebuild |
305 |
@@ -9,7 +9,7 @@ MY_PV="${PV/_}" # convert from mira-4.0_rc2 (Gentoo ebuild filename derived) to |
306 |
|
307 |
inherit autotools eutils multilib |
308 |
|
309 |
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" |
310 |
+DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler" |
311 |
HOMEPAGE="http://www.chevreux.org/projects_mira.html" |
312 |
SRC_URI=" |
313 |
http://sourceforge.net/projects/mira-assembler/files/MIRA/development/"${PN}"-"${MY_PV}".tar.bz2 |
314 |
|
315 |
diff --git a/sci-biology/ngsview/ngsview-0.91.ebuild b/sci-biology/ngsview/ngsview-0.91.ebuild |
316 |
index 8d46197..863bf10 100644 |
317 |
--- a/sci-biology/ngsview/ngsview-0.91.ebuild |
318 |
+++ b/sci-biology/ngsview/ngsview-0.91.ebuild |
319 |
@@ -6,7 +6,7 @@ EAPI=5 |
320 |
|
321 |
inherit qt4-r2 |
322 |
|
323 |
-DESCRIPTION="Display, edit next-gen sequence alignment (BED, BLAST, Eland, mapview processed MAQ, Corona formats)" |
324 |
+DESCRIPTION="Display, edit NGS alignments" |
325 |
HOMEPAGE="http://sourceforge.net/projects/ngsview" |
326 |
SRC_URI="mirror://sourceforge/projects/${PN}/files/${PN}/${P}.tar.gz" |
327 |
|
328 |
|
329 |
diff --git a/sci-biology/perlprimer/perlprimer-1.1.21.ebuild b/sci-biology/perlprimer/perlprimer-1.1.21.ebuild |
330 |
index e6f00dc..235a0ab 100644 |
331 |
--- a/sci-biology/perlprimer/perlprimer-1.1.21.ebuild |
332 |
+++ b/sci-biology/perlprimer/perlprimer-1.1.21.ebuild |
333 |
@@ -4,7 +4,7 @@ |
334 |
|
335 |
EAPI=5 |
336 |
|
337 |
-DESCRIPTION="GUI application written in Perl to design primers for standard PCR, bisulphite PCR and Real-time PCR" |
338 |
+DESCRIPTION="Primers design for standard PCR, bisulphite PCR and Real-time PCR" |
339 |
HOMEPAGE="http://perlprimer.sourceforge.net/" |
340 |
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" |
341 |
|
342 |
|
343 |
diff --git a/sci-biology/pileup/pileup-0.6.ebuild b/sci-biology/pileup/pileup-0.6.ebuild |
344 |
index 77322f4..260ad8a 100644 |
345 |
--- a/sci-biology/pileup/pileup-0.6.ebuild |
346 |
+++ b/sci-biology/pileup/pileup-0.6.ebuild |
347 |
@@ -4,7 +4,7 @@ |
348 |
|
349 |
EAPI=5 |
350 |
|
351 |
-DESCRIPTION="SSAHA2-based pipeline to align reads into format also understood by samtools, maq" |
352 |
+DESCRIPTION="SSAHA2-based pipeline to align reads" |
353 |
HOMEPAGE="http://www.sanger.ac.uk/resources/software/ssaha2/" |
354 |
SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/pileup.tgz" |
355 |
|
356 |
|
357 |
diff --git a/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild b/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild |
358 |
index 4b6f645..df1a092 100644 |
359 |
--- a/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild |
360 |
+++ b/sci-biology/roche454ace2caf/roche454ace2caf-20100812.ebuild |
361 |
@@ -4,7 +4,7 @@ |
362 |
|
363 |
EAPI=6 |
364 |
|
365 |
-DESCRIPTION="Convert from ace to gap4 (of staden v1.x), not needed to convert ace for gap5 of staden v2" |
366 |
+DESCRIPTION="ace to gap4 converter" |
367 |
HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf" |
368 |
SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/roche454ace2gap-2010-12-08.tgz" |
369 |
|
370 |
|
371 |
diff --git a/sci-biology/samstat/samstat-20130708.ebuild b/sci-biology/samstat/samstat-20130708.ebuild |
372 |
index 61c4135..bfd17cd 100644 |
373 |
--- a/sci-biology/samstat/samstat-20130708.ebuild |
374 |
+++ b/sci-biology/samstat/samstat-20130708.ebuild |
375 |
@@ -6,7 +6,7 @@ EAPI=5 |
376 |
|
377 |
inherit eutils |
378 |
|
379 |
-DESCRIPTION="Show statistics of BAM/SAM (error profiles, nucleotide composition, base quals, len. distribution)" |
380 |
+DESCRIPTION="Statistics of BAM/SAM files" |
381 |
HOMEPAGE="http://samstat.sourceforge.net" |
382 |
SRC_URI="http://sourceforge.net/projects/samstat/files/samstat.tgz" |
383 |
|
384 |
|
385 |
diff --git a/sci-biology/samtools/samtools-1.0-r2.ebuild b/sci-biology/samtools/samtools-1.0-r2.ebuild |
386 |
index b10e681..4c85410 100644 |
387 |
--- a/sci-biology/samtools/samtools-1.0-r2.ebuild |
388 |
+++ b/sci-biology/samtools/samtools-1.0-r2.ebuild |
389 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
390 |
|
391 |
inherit eutils multilib python-r1 toolchain-funcs |
392 |
|
393 |
-DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" |
394 |
+DESCRIPTION="Utilities for SAM (Sequence Alignment/Map)" |
395 |
HOMEPAGE="http://www.htslib.org/" |
396 |
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" |
397 |
|
398 |
|
399 |
diff --git a/sci-biology/samtools/samtools-1.1-r1.ebuild b/sci-biology/samtools/samtools-1.1-r1.ebuild |
400 |
index 9941156..5932f8d 100644 |
401 |
--- a/sci-biology/samtools/samtools-1.1-r1.ebuild |
402 |
+++ b/sci-biology/samtools/samtools-1.1-r1.ebuild |
403 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
404 |
|
405 |
inherit eutils multilib python-r1 toolchain-funcs |
406 |
|
407 |
-DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" |
408 |
+DESCRIPTION="Utilities for SAM (Sequence Alignment/Map)" |
409 |
HOMEPAGE="http://www.htslib.org/" |
410 |
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" |
411 |
|
412 |
|
413 |
diff --git a/sci-biology/samtools/samtools-1.2-r1.ebuild b/sci-biology/samtools/samtools-1.2-r1.ebuild |
414 |
index dcbd07b..87d702b 100644 |
415 |
--- a/sci-biology/samtools/samtools-1.2-r1.ebuild |
416 |
+++ b/sci-biology/samtools/samtools-1.2-r1.ebuild |
417 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
418 |
|
419 |
inherit eutils multilib python-r1 toolchain-funcs |
420 |
|
421 |
-DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments" |
422 |
+DESCRIPTION="Utilities for SAM (Sequence Alignment/Map)" |
423 |
HOMEPAGE="http://www.htslib.org/" |
424 |
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" |
425 |
|
426 |
|
427 |
diff --git a/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild |
428 |
index 0a7ae54..b57b6a0 100644 |
429 |
--- a/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild |
430 |
+++ b/sci-biology/scaffold_builder/scaffold_builder-20131122-r1.ebuild |
431 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
432 |
|
433 |
inherit python-r1 |
434 |
|
435 |
-DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference genome" |
436 |
+DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds" |
437 |
HOMEPAGE=" |
438 |
http://sourceforge.net/projects/scaffold-b |
439 |
http://edwards.sdsu.edu/scaffold_builder" |
440 |
|
441 |
diff --git a/sci-biology/sclust/sclust-0.1.ebuild b/sci-biology/sclust/sclust-0.1.ebuild |
442 |
index cb5fe1f..1ee71b6 100644 |
443 |
--- a/sci-biology/sclust/sclust-0.1.ebuild |
444 |
+++ b/sci-biology/sclust/sclust-0.1.ebuild |
445 |
@@ -4,7 +4,7 @@ |
446 |
|
447 |
EAPI=5 |
448 |
|
449 |
-DESCRIPTION="seeded clustering tool by processing pairwise alignments from TIGR Gene Indices project tools" |
450 |
+DESCRIPTION="Seeded clustering tool by processing pairwise alignments" |
451 |
HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/" |
452 |
SRC_URI=" |
453 |
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz |
454 |
|
455 |
diff --git a/sci-biology/sequin/sequin-20121202.ebuild b/sci-biology/sequin/sequin-20121202.ebuild |
456 |
index f0fc001..da9832e 100644 |
457 |
--- a/sci-biology/sequin/sequin-20121202.ebuild |
458 |
+++ b/sci-biology/sequin/sequin-20121202.ebuild |
459 |
@@ -6,7 +6,7 @@ EAPI=5 |
460 |
|
461 |
inherit eutils |
462 |
|
463 |
-DESCRIPTION="A tool to facilitate submission of data to the GenBank, EMBL, and DDBJ sequence databases" |
464 |
+DESCRIPTION="Facilitate submission of data to the GenBank, EMBL, and DDBJ sequence databases" |
465 |
HOMEPAGE="http://www.ncbi.nlm.nih.gov/Sequin/" |
466 |
SRC_URI=" |
467 |
amd64? ( ftp://ftp.ncbi.nih.gov/sequin/sequin.linux-x86_64.tar.gz -> ${P}-x86_64.tar.gz ) |
468 |
|
469 |
diff --git a/sci-biology/sgp2/sgp2-1.1.ebuild b/sci-biology/sgp2/sgp2-1.1.ebuild |
470 |
index 0c8f94f..b8ab027 100644 |
471 |
--- a/sci-biology/sgp2/sgp2-1.1.ebuild |
472 |
+++ b/sci-biology/sgp2/sgp2-1.1.ebuild |
473 |
@@ -6,7 +6,7 @@ EAPI=5 |
474 |
|
475 |
inherit eutils |
476 |
|
477 |
-DESCRIPTION="Find ORFs by comparing two genomic/EST sequences using tblastx and geneid ab initio predictions" |
478 |
+DESCRIPTION="Find ORFs by comparing two genomic/EST sequences" |
479 |
HOMEPAGE="http://genome.crg.es/software/sgp2/" |
480 |
SRC_URI="ftp://genome.crg.es/pub/software/sgp2/sgp2_v1.1.May_8_2012.tar.gz" |
481 |
|
482 |
|
483 |
diff --git a/sci-biology/sickle/sickle-1.33.ebuild b/sci-biology/sickle/sickle-1.33.ebuild |
484 |
index c790d5b..1d79478 100644 |
485 |
--- a/sci-biology/sickle/sickle-1.33.ebuild |
486 |
+++ b/sci-biology/sickle/sickle-1.33.ebuild |
487 |
@@ -8,7 +8,7 @@ inherit eutils eutils toolchain-funcs |
488 |
|
489 |
[ "$PV" == "9999" ] && inherit git-r3 |
490 |
|
491 |
-DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa" |
492 |
+DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data" |
493 |
HOMEPAGE="https://github.com/najoshi/sickle" |
494 |
if [ "$PV" == "9999" ]; then |
495 |
EGIT_REPO_URI="https://github.com/najoshi/sickle" |
496 |
|
497 |
diff --git a/sci-biology/sickle/sickle-9999.ebuild b/sci-biology/sickle/sickle-9999.ebuild |
498 |
index c790d5b..1d79478 100644 |
499 |
--- a/sci-biology/sickle/sickle-9999.ebuild |
500 |
+++ b/sci-biology/sickle/sickle-9999.ebuild |
501 |
@@ -8,7 +8,7 @@ inherit eutils eutils toolchain-funcs |
502 |
|
503 |
[ "$PV" == "9999" ] && inherit git-r3 |
504 |
|
505 |
-DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data from Illumina/Solexa" |
506 |
+DESCRIPTION="Windowed adaptive quality-based trimming tool for FASTQ data" |
507 |
HOMEPAGE="https://github.com/najoshi/sickle" |
508 |
if [ "$PV" == "9999" ]; then |
509 |
EGIT_REPO_URI="https://github.com/najoshi/sickle" |
510 |
|
511 |
diff --git a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild |
512 |
index c873326..772cd67 100644 |
513 |
--- a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild |
514 |
+++ b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild |
515 |
@@ -4,7 +4,7 @@ |
516 |
|
517 |
EAPI=5 |
518 |
|
519 |
-DESCRIPTION="Adaptor and MID removal / trimming tool, also for Illumina-oriented paired-end reads" |
520 |
+DESCRIPTION="Adaptor and MID removal / trimming tool" |
521 |
HOMEPAGE="http://sourceforge.net/projects/skewer" |
522 |
SRC_URI=" |
523 |
http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64 |
524 |
|
525 |
diff --git a/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild b/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild |
526 |
index 694fc7d..fda5368 100644 |
527 |
--- a/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild |
528 |
+++ b/sci-biology/smalt-bin/smalt-bin-0.7.4.ebuild |
529 |
@@ -7,7 +7,7 @@ EAPI=5 |
530 |
MY_PN="${PN%-bin}" |
531 |
MY_P="${MY_PN}-${PV}" |
532 |
|
533 |
-DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference, better over SSAHA2" |
534 |
+DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference" |
535 |
HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/" |
536 |
SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/${MY_PN}/${MY_P}.tgz" |
537 |
|
538 |
|
539 |
diff --git a/sci-biology/stacks/stacks-1.44.ebuild b/sci-biology/stacks/stacks-1.44.ebuild |
540 |
index 0b4ca80..4861732 100644 |
541 |
--- a/sci-biology/stacks/stacks-1.44.ebuild |
542 |
+++ b/sci-biology/stacks/stacks-1.44.ebuild |
543 |
@@ -8,7 +8,7 @@ AUTOTOOLS_AUTORECONF=yes |
544 |
|
545 |
inherit flag-o-matic eutils perl-module webapp autotools |
546 |
|
547 |
-DESCRIPTION="Analyze restriction enzyme data, draw gen. maps, population genomics (RAD-seq sequencing)" |
548 |
+DESCRIPTION="Analyze restriction enzyme data, draw gen. maps, population genomics" |
549 |
HOMEPAGE="http://creskolab.uoregon.edu/stacks" |
550 |
SRC_URI="http://creskolab.uoregon.edu/stacks/source/${P}.tar.gz" |
551 |
|
552 |
|
553 |
diff --git a/sci-biology/subread/subread-1.4.6.ebuild b/sci-biology/subread/subread-1.4.6.ebuild |
554 |
index 3f42edf..ac164fd 100644 |
555 |
--- a/sci-biology/subread/subread-1.4.6.ebuild |
556 |
+++ b/sci-biology/subread/subread-1.4.6.ebuild |
557 |
@@ -6,7 +6,7 @@ EAPI=5 |
558 |
|
559 |
[ "$PV" == "9999" ] && inherit subversion |
560 |
|
561 |
-DESCRIPTION="NGS suite for read mapping, analysis of mapped reads, summary of exon/intron/gene counts" |
562 |
+DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts" |
563 |
HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/" |
564 |
if [ "$PV" == "9999" ]; then |
565 |
ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk" |
566 |
|
567 |
diff --git a/sci-biology/symap/symap-4.0.ebuild b/sci-biology/symap/symap-4.0.ebuild |
568 |
index 42ce623..9fe8c96 100644 |
569 |
--- a/sci-biology/symap/symap-4.0.ebuild |
570 |
+++ b/sci-biology/symap/symap-4.0.ebuild |
571 |
@@ -4,7 +4,7 @@ |
572 |
|
573 |
EAPI=5 |
574 |
|
575 |
-DESCRIPTION="Synteny Mapping and Analysis Program between chromosomes, contigs and physical maps" |
576 |
+DESCRIPTION="Synteny Mapping and Analysis Program" |
577 |
HOMEPAGE="http://www.agcol.arizona.edu/software/symap/" |
578 |
SRC_URI="symap_40.tar.gz" |
579 |
|
580 |
|
581 |
diff --git a/sci-biology/tgicl/tgicl-2.1.ebuild b/sci-biology/tgicl/tgicl-2.1.ebuild |
582 |
index ae10de3..190b419 100644 |
583 |
--- a/sci-biology/tgicl/tgicl-2.1.ebuild |
584 |
+++ b/sci-biology/tgicl/tgicl-2.1.ebuild |
585 |
@@ -6,7 +6,7 @@ EAPI=5 |
586 |
|
587 |
inherit perl-module |
588 |
|
589 |
-DESCRIPTION="TIGR perl scripts for clustering large EST/mRNAs datasets and aceconv, mgblast and pvmsx binaries" |
590 |
+DESCRIPTION="TIGR perl scripts for clustering" |
591 |
HOMEPAGE="http://sourceforge.net/projects/tgicl" |
592 |
SRC_URI="http://sourceforge.net/projects/tgicl/files/tgicl%20v2.1/TGICL-2.1.tar.gz" |
593 |
|
594 |
|
595 |
diff --git a/sci-biology/trowel/trowel-0.1.4.1.ebuild b/sci-biology/trowel/trowel-0.1.4.1.ebuild |
596 |
index ae4282f..bfdd7b0 100644 |
597 |
--- a/sci-biology/trowel/trowel-0.1.4.1.ebuild |
598 |
+++ b/sci-biology/trowel/trowel-0.1.4.1.ebuild |
599 |
@@ -4,7 +4,7 @@ |
600 |
|
601 |
EAPI=5 |
602 |
|
603 |
-DESCRIPTION="Error corrector for genomic Illumina FASTQ reads using QUALs and not coverage info" |
604 |
+DESCRIPTION="Error corrector for genomic Illumina FASTQ reads" |
605 |
HOMEPAGE="http://sourceforge.net/projects/trowel-ec" |
606 |
SRC_URI="http://downloads.sourceforge.net/project/trowel-ec/src/trowel.0.1.4.1.src.tar.gz" |
607 |
|
608 |
|
609 |
diff --git a/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild b/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild |
610 |
index 35f7f58..a1aaaca 100644 |
611 |
--- a/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild |
612 |
+++ b/sci-biology/wgs-assembler/wgs-assembler-8.3_rc2.ebuild |
613 |
@@ -10,7 +10,7 @@ inherit eutils python-single-r1 toolchain-funcs |
614 |
|
615 |
MY_PV="${PV/_}" # convert from _rc2 to rc2 |
616 |
|
617 |
-DESCRIPTION="De novo whole-genome shotgun DNA sequence OLC assembler (Celera Assembler, CABOG)" |
618 |
+DESCRIPTION="De novo whole-genome shotgun DNA sequence OLC assembler" |
619 |
HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/" |
620 |
SRC_URI="http://sourceforge.net/projects/${PN}/files/${PN}/wgs-8.3/wgs-${MY_PV}.tar.bz2" |
621 |
|
622 |
|
623 |
diff --git a/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild b/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild |
624 |
index 7341392..87f91cf 100644 |
625 |
--- a/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild |
626 |
+++ b/sci-chemistry/chooch/chooch-5.0.2-r1.ebuild |
627 |
@@ -8,7 +8,7 @@ AUTOTOOLS_AUTORECONF=true |
628 |
|
629 |
inherit autotools-utils multilib toolchain-funcs |
630 |
|
631 |
-DESCRIPTION="a program that will automatically determine values of the anomalous scattering factors" |
632 |
+DESCRIPTION="Automatically determine values of the anomalous scattering factors" |
633 |
HOMEPAGE="http://www.gwyndafevans.co.uk/id2.html" |
634 |
SRC_URI="ftp://ftp.ccp4.ac.uk/${PN}/${PV}/packed/${P}.tar.gz" |
635 |
|
636 |
|
637 |
diff --git a/sci-chemistry/concoord/concoord-2.1.2.ebuild b/sci-chemistry/concoord/concoord-2.1.2.ebuild |
638 |
index e6308ea..e1e2bd9 100644 |
639 |
--- a/sci-chemistry/concoord/concoord-2.1.2.ebuild |
640 |
+++ b/sci-chemistry/concoord/concoord-2.1.2.ebuild |
641 |
@@ -4,7 +4,7 @@ |
642 |
|
643 |
EAPI=5 |
644 |
|
645 |
-DESCRIPTION="Method to generate protein conformations around a known structure based on geometric restrictions" |
646 |
+DESCRIPTION="Protein conformations around a known structure based on geometric restrictions" |
647 |
HOMEPAGE="http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord.html" |
648 |
SRC_URI=" |
649 |
amd64? ( http://www3.mpibpc.mpg.de/groups/de_groot/${PN}/${PN}_${PV}_linux64.tgz ) |
650 |
|
651 |
diff --git a/sci-chemistry/concoord/concoord-2.1.ebuild b/sci-chemistry/concoord/concoord-2.1.ebuild |
652 |
index 8ec96b9..6f5ec47 100644 |
653 |
--- a/sci-chemistry/concoord/concoord-2.1.ebuild |
654 |
+++ b/sci-chemistry/concoord/concoord-2.1.ebuild |
655 |
@@ -4,7 +4,7 @@ |
656 |
|
657 |
EAPI=5 |
658 |
|
659 |
-DESCRIPTION="Method to generate protein conformations around a known structure based on geometric restrictions" |
660 |
+DESCRIPTION="Protein conformations around a known structure based on geometric restrictions" |
661 |
HOMEPAGE="http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord.html" |
662 |
SRC_URI=" |
663 |
amd64? ( http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord2.1_linux_x86_64.tgz ) |
664 |
|
665 |
diff --git a/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild b/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild |
666 |
index 8123048..4909fbe 100644 |
667 |
--- a/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild |
668 |
+++ b/sci-chemistry/mddnmr/mddnmr-2.4-r1.ebuild |
669 |
@@ -10,7 +10,7 @@ inherit python-single-r1 |
670 |
|
671 |
MY_P="${PN}${PV}" |
672 |
|
673 |
-DESCRIPTION="Program for processing of non-uniformly sampled (NUS) multidimensional NMR spectra" |
674 |
+DESCRIPTION="Program for processing of NUS multidimensional NMR spectra" |
675 |
HOMEPAGE="http://www.nmr.gu.se/~mdd/" |
676 |
SRC_URI="http://pc8.nmr.gu.se/~mdd/Downloads/${MY_P}.tgz" |
677 |
|
678 |
|
679 |
diff --git a/sci-chemistry/modelfree/modelfree-4.20.ebuild b/sci-chemistry/modelfree/modelfree-4.20.ebuild |
680 |
index a40d489..66f5721 100644 |
681 |
--- a/sci-chemistry/modelfree/modelfree-4.20.ebuild |
682 |
+++ b/sci-chemistry/modelfree/modelfree-4.20.ebuild |
683 |
@@ -6,7 +6,7 @@ EAPI=5 |
684 |
|
685 |
inherit fortran-2 multilib |
686 |
|
687 |
-DESCRIPTION="A program for optimizing Lipari-Szabo model free parameters to heteronuclear relaxation data" |
688 |
+DESCRIPTION="Optimizing Lipari-Szabo model free parameters to heteronuclear relaxation data" |
689 |
HOMEPAGE="http://www.palmer.hs.columbia.edu/software/modelfree.html" |
690 |
SRC_URI="http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz" |
691 |
|
692 |
|
693 |
diff --git a/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild b/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild |
694 |
index 08696a4..bc7cf14 100644 |
695 |
--- a/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild |
696 |
+++ b/sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild |
697 |
@@ -6,7 +6,7 @@ EAPI=5 |
698 |
|
699 |
inherit eutils toolchain-funcs |
700 |
|
701 |
-DESCRIPTION="Intended to facilitate the transition from refmac5 refinement to shelxh or shelxl refinement" |
702 |
+DESCRIPTION="Facilitate the transition from refmac5 refinement to shelxh or shelxl refinement" |
703 |
HOMEPAGE="http://shelx.uni-ac.gwdg.de/~tg/research/programs/conv/mtz2x/mtz2hkl/" |
704 |
SRC_URI="http://shelx.uni-ac.gwdg.de/~tg/research/programs/conv/mtz2x/${PN}/downloads/${PV}/${PN}_v${PV}.tar.gz" |
705 |
|
706 |
|
707 |
diff --git a/sci-chemistry/redcat/redcat-3.ebuild b/sci-chemistry/redcat/redcat-3.ebuild |
708 |
index bf8d739..3105334 100644 |
709 |
--- a/sci-chemistry/redcat/redcat-3.ebuild |
710 |
+++ b/sci-chemistry/redcat/redcat-3.ebuild |
711 |
@@ -6,7 +6,7 @@ EAPI=5 |
712 |
|
713 |
inherit cmake-utils java-pkg-2 |
714 |
|
715 |
-DESCRIPTION="Analysis of residual dipolar couplings (RDCs) for structure validation and elucidation" |
716 |
+DESCRIPTION="Analysis of RDCs for structure validation and elucidation" |
717 |
HOMEPAGE="http://ifestos.cse.sc.edu/software.php" |
718 |
SRC_URI="http://ifestos.cse.sc.edu/downloads.php?get=Redcat.${PV}.tar.gz -> Redcat.${PV}.tar.gz" |
719 |
|
720 |
|
721 |
diff --git a/sci-chemistry/rosetta/rosetta-3.4.ebuild b/sci-chemistry/rosetta/rosetta-3.4.ebuild |
722 |
index 139641e..241cdba 100644 |
723 |
--- a/sci-chemistry/rosetta/rosetta-3.4.ebuild |
724 |
+++ b/sci-chemistry/rosetta/rosetta-3.4.ebuild |
725 |
@@ -11,7 +11,7 @@ inherit eutils multilib prefix scons-utils toolchain-funcs versionator |
726 |
#MY_P="${PN}$(get_major_version)_source" |
727 |
MY_P="${PN}${PV}_source" |
728 |
|
729 |
-DESCRIPTION="Prediction and design of protein structures, folding mechanisms, and protein-protein interactions" |
730 |
+DESCRIPTION="Prediction of protein structures and protein-protein interactions" |
731 |
HOMEPAGE="http://www.rosettacommons.org/" |
732 |
SRC_URI="${MY_P}.tgz patch_rosetta3.4_to_CSROSETTA3_ver1.3.txt" |
733 |
|
734 |
|
735 |
diff --git a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild |
736 |
index b56d269..18e43cb 100644 |
737 |
--- a/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild |
738 |
+++ b/sci-chemistry/shiftx2/shiftx2-1.07_p20120106.ebuild |
739 |
@@ -12,7 +12,7 @@ MY_PV="$(delete_all_version_separators $(get_version_component_range 1-2))" |
740 |
MY_PATCH="20120106" |
741 |
MY_P="${PN}-v${MY_PV}-linux" |
742 |
|
743 |
-DESCRIPTION="Predicts both the backbone and side chain 1H, 13C and 15N chemical shifts for proteins" |
744 |
+DESCRIPTION="Predicts of backbone and side chain 1H, 13C and 15N CS for proteins" |
745 |
HOMEPAGE="http://shiftx2.wishartlab.com/" |
746 |
SRC_URI="http://shiftx2.wishartlab.com/download/${MY_P}-${MY_PATCH}.tgz" |
747 |
|
748 |
|
749 |
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild |
750 |
index f28e0fb..081c944 100644 |
751 |
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild |
752 |
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild |
753 |
@@ -6,7 +6,7 @@ EAPI=5 |
754 |
|
755 |
inherit java-pkg-opt-2 |
756 |
|
757 |
-DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts" |
758 |
+DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts" |
759 |
HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/" |
760 |
SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" |
761 |
|
762 |
|
763 |
diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild |
764 |
index f28e0fb..081c944 100644 |
765 |
--- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild |
766 |
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild |
767 |
@@ -6,7 +6,7 @@ EAPI=5 |
768 |
|
769 |
inherit java-pkg-opt-2 |
770 |
|
771 |
-DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts" |
772 |
+DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts" |
773 |
HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/" |
774 |
SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" |
775 |
|
776 |
|
777 |
diff --git a/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild b/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild |
778 |
index c0cc917..94fabb2 100644 |
779 |
--- a/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild |
780 |
+++ b/sci-geosciences/pydap_handlers_cdms/pydap_handlers_cdms-0.2.0.1.ebuild |
781 |
@@ -11,7 +11,7 @@ inherit distutils-r1 |
782 |
MY_PN=${PN//_/.} |
783 |
MY_P=${P//_/.} |
784 |
|
785 |
-DESCRIPTION="CDMS handler for Pydap server that supports netCDF, HDF, GrADS/GRIB, or PCMDI DRS" |
786 |
+DESCRIPTION="CDMS handler for Pydap server" |
787 |
HOMEPAGE="http://pydap.org/handlers.html#cdms" |
788 |
SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz" |
789 |
|
790 |
|
791 |
diff --git a/sci-libs/asl/asl-0.1.7.ebuild b/sci-libs/asl/asl-0.1.7.ebuild |
792 |
index cdec05f..f698a05 100644 |
793 |
--- a/sci-libs/asl/asl-0.1.7.ebuild |
794 |
+++ b/sci-libs/asl/asl-0.1.7.ebuild |
795 |
@@ -10,7 +10,7 @@ CMAKE_MAKEFILE_GENERATOR="${CMAKE_MAKEFILE_GENERATOR:-ninja}" |
796 |
|
797 |
inherit cmake-utils |
798 |
|
799 |
-DESCRIPTION="Advanced Simulation Library - hardware accelerated multiphysics simulation platform" |
800 |
+DESCRIPTION="Hardware accelerated multiphysics simulation platform" |
801 |
HOMEPAGE="http://asl.org.il/" |
802 |
SRC_URI="https://github.com/AvtechScientific/${MY_PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
803 |
|
804 |
|
805 |
diff --git a/sci-libs/asl/asl-9999.ebuild b/sci-libs/asl/asl-9999.ebuild |
806 |
index 81ecd1d..3f4b64e 100644 |
807 |
--- a/sci-libs/asl/asl-9999.ebuild |
808 |
+++ b/sci-libs/asl/asl-9999.ebuild |
809 |
@@ -10,7 +10,7 @@ CMAKE_MAKEFILE_GENERATOR="${CMAKE_MAKEFILE_GENERATOR:-ninja}" |
810 |
|
811 |
inherit cmake-utils git-r3 |
812 |
|
813 |
-DESCRIPTION="Advanced Simulation Library - hardware accelerated multiphysics simulation platform" |
814 |
+DESCRIPTION="Hardware accelerated multiphysics simulation platform" |
815 |
HOMEPAGE="http://asl.org.il/" |
816 |
SRC_URI="" |
817 |
EGIT_REPO_URI="git://github.com/AvtechScientific/${MY_PN}.git" |
818 |
|
819 |
diff --git a/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild b/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild |
820 |
index 076a4a9..f44e0f4 100644 |
821 |
--- a/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild |
822 |
+++ b/sci-libs/ipp/ipp-8.2.2.187-r1.ebuild |
823 |
@@ -12,7 +12,7 @@ INTEL_SINGLE_ARCH=false |
824 |
|
825 |
inherit intel-sdp |
826 |
|
827 |
-DESCRIPTION="Intel Integrated Performance Primitive library for multimedia and data processing" |
828 |
+DESCRIPTION="Intel Integrated Performance Primitive library" |
829 |
HOMEPAGE="http://software.intel.com/en-us/articles/intel-ipp/" |
830 |
|
831 |
IUSE="" |
832 |
|
833 |
diff --git a/sci-mathematics/apron/apron-0.9.10-r1.ebuild b/sci-mathematics/apron/apron-0.9.10-r1.ebuild |
834 |
index 622c06b..21d7f01 100644 |
835 |
--- a/sci-mathematics/apron/apron-0.9.10-r1.ebuild |
836 |
+++ b/sci-mathematics/apron/apron-0.9.10-r1.ebuild |
837 |
@@ -6,7 +6,7 @@ EAPI="5" |
838 |
|
839 |
inherit eutils toolchain-funcs |
840 |
|
841 |
-DESCRIPTION="Static analysis of the numerical variables of a program by Abstract Interpretation" |
842 |
+DESCRIPTION="Static analysis of the numerical variables by Abstract Interpretation" |
843 |
HOMEPAGE="http://apron.cri.ensmp.fr/library/" |
844 |
SRC_URI="http://apron.cri.ensmp.fr/library/${P}.tgz" |
845 |
|
846 |
|
847 |
diff --git a/sci-misc/elmer-gui/elmer-gui-9999.ebuild b/sci-misc/elmer-gui/elmer-gui-9999.ebuild |
848 |
index b33a150..6db93d0 100644 |
849 |
--- a/sci-misc/elmer-gui/elmer-gui-9999.ebuild |
850 |
+++ b/sci-misc/elmer-gui/elmer-gui-9999.ebuild |
851 |
@@ -11,7 +11,7 @@ inherit autotools eutils qt4-r2 subversion python-single-r1 versionator |
852 |
ELMER_ROOT="elmerfem" |
853 |
MY_PN=ElmerGUI |
854 |
|
855 |
-DESCRIPTION="a collection of finite element programs, libraries, and visualization tools, New Elmer pre-processor" |
856 |
+DESCRIPTION="Finite element programs, libraries, visualization tools" |
857 |
HOMEPAGE="http://www.csc.fi/english/pages/elmer" |
858 |
SRC_URI="" |
859 |
ESVN_REPO_URI="https://elmerfem.svn.sourceforge.net/svnroot/elmerfem/trunk/${MY_PN}" |
860 |
|
861 |
diff --git a/sci-misc/mitlm/mitlm-0.4.1.ebuild b/sci-misc/mitlm/mitlm-0.4.1.ebuild |
862 |
index a1d3e74..c343d16 100644 |
863 |
--- a/sci-misc/mitlm/mitlm-0.4.1.ebuild |
864 |
+++ b/sci-misc/mitlm/mitlm-0.4.1.ebuild |
865 |
@@ -6,7 +6,7 @@ EAPI="5" |
866 |
|
867 |
inherit autotools |
868 |
|
869 |
-DESCRIPTION="A set of tools designed for the efficient estimation of statistical n-gram language models" |
870 |
+DESCRIPTION="Tools designed for efficient estimation of statistical n-gram language models" |
871 |
HOMEPAGE="https://github.com/mitlm/mitlm" |
872 |
SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${PN}_${PV}.tar.gz -> ${P}.tar.gz" |
873 |
|
874 |
|
875 |
diff --git a/sci-physics/abinit/abinit-7.10.4.ebuild b/sci-physics/abinit/abinit-7.10.4.ebuild |
876 |
index ed16815..48c31f3 100644 |
877 |
--- a/sci-physics/abinit/abinit-7.10.4.ebuild |
878 |
+++ b/sci-physics/abinit/abinit-7.10.4.ebuild |
879 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
880 |
|
881 |
inherit autotools-utils eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs |
882 |
|
883 |
-DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" |
884 |
+DESCRIPTION="Total energy, charge density and electronic structure using DFT" |
885 |
HOMEPAGE="http://www.abinit.org/" |
886 |
SRC_URI="http://ftp.abinit.org/${P}.tar.gz" |
887 |
|
888 |
|
889 |
diff --git a/sci-physics/abinit/abinit-7.4.2-r1.ebuild b/sci-physics/abinit/abinit-7.4.2-r1.ebuild |
890 |
index 51f7ee7..45b7caa 100644 |
891 |
--- a/sci-physics/abinit/abinit-7.4.2-r1.ebuild |
892 |
+++ b/sci-physics/abinit/abinit-7.4.2-r1.ebuild |
893 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
894 |
|
895 |
inherit autotools-utils eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs |
896 |
|
897 |
-DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" |
898 |
+DESCRIPTION="Total energy, charge density and electronic structure using DFT" |
899 |
HOMEPAGE="http://www.abinit.org/" |
900 |
SRC_URI="http://ftp.abinit.org/${P}.tar.gz" |
901 |
|
902 |
|
903 |
diff --git a/sci-physics/abinit/abinit-7.6.4-r1.ebuild b/sci-physics/abinit/abinit-7.6.4-r1.ebuild |
904 |
index 61ba323..6dd7323 100644 |
905 |
--- a/sci-physics/abinit/abinit-7.6.4-r1.ebuild |
906 |
+++ b/sci-physics/abinit/abinit-7.6.4-r1.ebuild |
907 |
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) |
908 |
|
909 |
inherit autotools-utils eutils flag-o-matic fortran-2 multilib python-single-r1 toolchain-funcs |
910 |
|
911 |
-DESCRIPTION="Find total energy, charge density and electronic structure using density functional theory" |
912 |
+DESCRIPTION="Total energy, charge density and electronic structure using DFT" |
913 |
HOMEPAGE="http://www.abinit.org/" |
914 |
SRC_URI="http://ftp.abinit.org/${P}.tar.gz" |
915 |
|
916 |
|
917 |
diff --git a/sci-physics/mc-tester/mc-tester-1.25.0.ebuild b/sci-physics/mc-tester/mc-tester-1.25.0.ebuild |
918 |
index 78eff0e..84b7cd9 100644 |
919 |
--- a/sci-physics/mc-tester/mc-tester-1.25.0.ebuild |
920 |
+++ b/sci-physics/mc-tester/mc-tester-1.25.0.ebuild |
921 |
@@ -8,7 +8,7 @@ inherit eutils |
922 |
|
923 |
MYPN=MC-TESTER |
924 |
|
925 |
-DESCRIPTION="A universal tool for comparisons of Monte Carlo predictions in High Energy Physics" |
926 |
+DESCRIPTION="Comparisons of Monte Carlo predictions in High Energy Physics" |
927 |
HOMEPAGE="http://mc-tester.web.cern.ch/MC-TESTER/" |
928 |
SRC_URI="http://mc-tester.web.cern.ch/MC-TESTER/${MYPN}-${PV}.tar.gz" |
929 |
LICENSE="CPC GPL-2+" |
930 |
|
931 |
diff --git a/sci-physics/openmx/openmx-3.6.ebuild b/sci-physics/openmx/openmx-3.6.ebuild |
932 |
index 978d5f3..02176eb 100644 |
933 |
--- a/sci-physics/openmx/openmx-3.6.ebuild |
934 |
+++ b/sci-physics/openmx/openmx-3.6.ebuild |
935 |
@@ -6,7 +6,7 @@ EAPI=5 |
936 |
|
937 |
inherit eutils multilib toolchain-funcs |
938 |
|
939 |
-DESCRIPTION="Material eXplorer using DFT, NC pseudopotentials, and pseudo-atomic localized basis functions" |
940 |
+DESCRIPTION="Material eXplorer" |
941 |
HOMEPAGE="http://www.openmx-square.org/" |
942 |
SRC_URI=" |
943 |
http://www.openmx-square.org/${PN}${PV}.tar.gz |
944 |
|
945 |
diff --git a/sci-physics/openmx/openmx-3.7.8.ebuild b/sci-physics/openmx/openmx-3.7.8.ebuild |
946 |
index 3468aa1..a227c0b 100644 |
947 |
--- a/sci-physics/openmx/openmx-3.7.8.ebuild |
948 |
+++ b/sci-physics/openmx/openmx-3.7.8.ebuild |
949 |
@@ -8,7 +8,7 @@ inherit eutils multilib toolchain-funcs fortran-2 |
950 |
|
951 |
PATCHDATE="14Feb17" |
952 |
|
953 |
-DESCRIPTION="Material eXplorer using DFT, NC pseudopotentials, and pseudo-atomic localized basis functions" |
954 |
+DESCRIPTION="Material eXplorer" |
955 |
HOMEPAGE="http://www.openmx-square.org/" |
956 |
SRC_URI=" |
957 |
http://www.openmx-square.org/${PN}${PV%.[0-9]}.tar.gz |