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commit: e9643bc810aa1b949e80bc0619831f7235c5b9e4 |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Sun Jan 29 11:46:31 2017 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Sun Jan 29 11:59:23 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e9643bc8 |
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|
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sci-biology/repeatmasker: QA fixes |
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|
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BUMP EAPI to 6 |
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sort deps |
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use optfeature |
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Add missing quotes |
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|
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Package-Manager: Portage-2.3.3, Repoman-2.3.1 |
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild | 17 +++++++++-------- |
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1 file changed, 9 insertions(+), 8 deletions(-) |
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|
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diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild |
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index c320942..3da4241 100644 |
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--- a/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild |
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+++ b/sci-biology/repeatmasker/repeatmasker-4.0.6-r3.ebuild |
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@@ -2,7 +2,7 @@ |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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-EAPI=5 |
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+EAPI=6 |
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|
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inherit eutils |
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|
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@@ -19,11 +19,12 @@ IUSE="" |
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|
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DEPEND=">=dev-lang/perl-5.8" |
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RDEPEND=" |
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+ dev-perl/Text-Soundex |
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+ sci-biology/phrap |
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+ sci-biology/repeatmasker-libraries |
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sci-biology/rmblast |
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>=sci-biology/trf-4.0.4 |
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- sci-biology/repeatmasker-libraries |
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- sci-biology/phrap |
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- dev-perl/Text-Soundex" |
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+" |
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|
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S="${WORKDIR}/RepeatMasker" |
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|
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@@ -45,7 +46,7 @@ src_configure() { |
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# below try to define paths to trf, cross_match, rmblast and nhmmer as search tools |
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echo " |
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env |
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-${S} |
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+\"${S}\" |
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/opt/bin |
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1 |
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/usr/bin |
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@@ -96,8 +97,8 @@ pkg_postinst(){ |
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einfo "PATHs to the search binaries are defined in" |
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einfo "/usr/share/${PN}/lib/RepeatMaskerConfig.pm" |
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einfo "Supported search engines are:" |
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- einfo "cross_match from sci-biology/phrap" |
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- einfo "rmblast from sci-biology/rmblast" |
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- einfo "nhmmer from >=sci-biology/hmmer-3.1" |
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+ optfeature "cross_match" sci-biology/phrap |
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+ optfeature "rmblast" sci-biology/rmblast |
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+ optfeature "nhmmer" >=sci-biology/hmmer-3.1 |
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einfo "abblast/wublast from http://blast.advbiocomp.com/licensing" |
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} |
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