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jlec 11/02/01 09:06:35 |
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Added: 4.5.1-gentoo.patch |
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Log: |
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New addition, written by me |
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(Portage version: 2.2.0_alpha19/cvs/Linux x86_64) |
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Revision Changes Path |
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1.1 sci-biology/cd-hit/files/4.5.1-gentoo.patch |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cd-hit/files/4.5.1-gentoo.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cd-hit/files/4.5.1-gentoo.patch?rev=1.1&content-type=text/plain |
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Index: 4.5.1-gentoo.patch |
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=================================================================== |
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diff --git a/Makefile b/Makefile |
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index f1eaa26..92d3130 100644 |
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--- a/Makefile |
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+++ b/Makefile |
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@@ -10,7 +10,7 @@ CCFLAGS = -O2 -DNO_OPENMP |
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# in command line: |
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# make openmp=yes |
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ifeq ($(openmp),yes) |
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-CCFLAGS = -O2 -fopenmp |
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+CXXFLAGS += -fopenmp |
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endif |
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# support debugging |
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@@ -18,16 +18,16 @@ endif |
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# make debug=yes |
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# make openmp=yes debug=yes |
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ifeq ($(debug),yes) |
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-CCFLAGS += -ggdb |
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+CXXFLAGS += -ggdb |
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endif |
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#LDFLAGS = -static -o |
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-LDFLAGS = -o |
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+LDFLAGS += -o |
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PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div |
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.c++.o: |
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- $(CC) $(CCFLAGS) -c $< |
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+ $(CXX) $(CXXFLAGS) -c $< |
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all: $(PROGS) |
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@@ -37,39 +37,39 @@ clean: |
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# programs |
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cd-hit: cdhit-common.o cdhit-utility.o cdhit.o |
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- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit |
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+ $(CXX) $(CXXFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit |
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cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o |
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- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d |
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+ $(CXX) $(CXXFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d |
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cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o |
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- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est |
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+ $(CXX) $(CXXFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est |
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cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o |
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- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d |
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+ $(CXX) $(CXXFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d |
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cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o |
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- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div |
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+ $(CXX) $(CXXFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div |
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# objects |
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cdhit-common.o: cdhit-common.c++ cdhit-common.h |
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- $(CC) $(CCFLAGS) cdhit-common.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit-common.c++ -c |
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cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h |
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- $(CC) $(CCFLAGS) cdhit-utility.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit-utility.c++ -c |
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cdhit.o: cdhit.c++ cdhit-utility.h |
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- $(CC) $(CCFLAGS) cdhit.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit.c++ -c |
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cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h |
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- $(CC) $(CCFLAGS) cdhit-2d.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit-2d.c++ -c |
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cdhit-est.o: cdhit-est.c++ cdhit-utility.h |
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- $(CC) $(CCFLAGS) cdhit-est.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit-est.c++ -c |
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cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h |
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- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit-est-2d.c++ -c |
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cdhit-div.o: cdhit-div.c++ cdhit-common.h |
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- $(CC) $(CCFLAGS) cdhit-div.c++ -c |
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+ $(CXX) $(CXXFLAGS) cdhit-div.c++ -c |
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