[gentoo-commits] repo/gentoo:master commit in: dev-python/spyder/, dev-python/spyder/files/

[Joonas Niilola]

commit:     65326d87f3367e767fbc11ef80d97cbd7aecc850
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Sep  2 18:52:36 2020 +0000
Commit:     Joonas Niilola <juippis <AT> gentoo <DOT> org>
CommitDate: Tue Sep 15 08:09:23 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=65326d87

dev-python/spyder: version bump 4.1.5

latest stable release

Package-Manager: Portage-3.0.5, Repoman-3.0.1
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Closes: https://github.com/gentoo/gentoo/pull/17148
Signed-off-by: Joonas Niilola <juippis <AT> gentoo.org>

 dev-python/spyder/Manifest                         |   2 +
 .../files/spyder-4.1.5-doc-theme-renamed.patch     |  13 ++
 dev-python/spyder/spyder-4.1.5.ebuild              | 205 +++++++++++++++++++++
 3 files changed, 220 insertions(+)

diff --git a/dev-python/spyder/Manifest b/dev-python/spyder/Manifest
index a35f6bf4318..f493f700e6a 100644
--- a/dev-python/spyder/Manifest
+++ b/dev-python/spyder/Manifest
@@ -1,2 +1,4 @@
 DIST spyder-4.1.4.tar.gz 11699453 BLAKE2B 208ba4f32fa548ef8478d72c046e70ba43a2fccd2040629af03f7f56c379ebefa1e90594054f15a92aebdd14307d001c68ee5e6d2401a841e408c4af42436c33 SHA512 8a5f63b11648002838e0b4e5427b1c7cf9cbe4a4fd20af7e33e5e789cddaf6393bb7200bfacf8c7af19d723f12d99d2e962a769706b806335f7146ddd6853735
+DIST spyder-4.1.5.tar.gz 11705605 BLAKE2B da22046116ea67c1d4f02ddf44d846fcf4361c45bae57a0b328ae646a1bcdc35494d42cb909c8b4d51cf0ae7c6578c4b4a3c746e55a5055a98dcb6a2b7c3cabb SHA512 9b118d857806791ed83182019088ad5b877fffe5e26cd47b4638cd9bdc68fc6ad8339186046a30715b5ccc6c503bc0a2824b7260f325816c9f750b9af667e3f1
 DIST spyder-docs-0d5afe26b8e28f3eb9f36f4ec3828bf8375c339e.tar.gz 29749238 BLAKE2B 9cf655c2a6fdf84278eaeb2e6f13c92eb4e585f213fd4f164a2707bc3cf8cb8abaaa213c5e781414fb0eecb3cf26b1f1708b394cd1ca12fa353ccbdd33f01dcb SHA512 8ed005cbfc32d7c68cf633790446d5d271f4d38ad190c09b2bcfd3ee96f24af5443d911bcdea90dc6ad94c5dab78437b9db02d0d4a7ceb9afa37a31e4bad24ae
+DIST spyder-docs-7fbdabcbc37fe696e4ad5604cdbf4023dfbe8b6c.tar.gz 58822544 BLAKE2B 9ddd662eb0e3b2845a15bc38a0ab994fcf43824a560cf635a29e16b5eb66407706a412ea50a2f8e5c0212675df3422ece649bd1e50e3ecd1c34ee5727f8a2df9 SHA512 ab30f287733681da0b1d15656a44cd320401330309efbff8f0a89f59a15d5c57532a2eab3e8353d8c3856eac0a393385a852663d6698d0a0d309def21d13933d

diff --git a/dev-python/spyder/files/spyder-4.1.5-doc-theme-renamed.patch b/dev-python/spyder/files/spyder-4.1.5-doc-theme-renamed.patch
new file mode 100644
index 00000000000..8a93662950f
--- /dev/null
+++ b/dev-python/spyder/files/spyder-4.1.5-doc-theme-renamed.patch
@@ -0,0 +1,13 @@
+diff --git a/docs/doc/conf.py b/docs/doc/conf.py
+index fd6d5ec..3de0bad 100644
+--- a/docs/doc/conf.py
++++ b/docs/doc/conf.py
+@@ -129,7 +129,7 @@ pygments_style = "sphinx"
+ #
+ # CI = True
+ # TRAVIS_BRANCH = 'master'
+-html_theme = "pandas_sphinx_theme"
++html_theme = "pydata_sphinx_theme"
+ html_logo = '_static/spyder_logo.png'
+ html_theme_options = {
+     "external_links": [

diff --git a/dev-python/spyder/spyder-4.1.5.ebuild b/dev-python/spyder/spyder-4.1.5.ebuild
new file mode 100644
index 00000000000..6c70dc9cbd5
--- /dev/null
+++ b/dev-python/spyder/spyder-4.1.5.ebuild
@@ -0,0 +1,205 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7,8} )
+
+inherit eutils xdg distutils-r1
+
+# Commit of documentation to fetch
+DOCS_PV="7fbdabcbc37fe696e4ad5604cdbf4023dfbe8b6c"
+
+MYPV="${PV/_alpha/a}"
+
+DESCRIPTION="The Scientific Python Development Environment"
+HOMEPAGE="
+	https://www.spyder-ide.org/
+	https://github.com/spyder-ide/spyder/
+	https://pypi.org/project/spyder/"
+SRC_URI="https://github.com/spyder-ide/${PN}/archive/v${MYPV}.tar.gz -> ${P}.tar.gz
+	https://github.com/spyder-ide/${PN}-docs/archive/${DOCS_PV}.tar.gz -> ${PN}-docs-${DOCS_PV}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+# Extra indented deps are expansion of python-language-server[all] dep
+# As the pyls ebuild does not add flags for optional runtime dependencies
+# we have to manually specify these desp instead of just depending on the [all]
+# flag. The indentation allows us to distinguish them from spyders direct deps.
+RDEPEND="
+	>=dev-python/atomicwrites-1.2.0[${PYTHON_USEDEP}]
+	>=dev-python/chardet-2.0.0[${PYTHON_USEDEP}]
+	>=dev-python/cloudpickle-0.5.0[${PYTHON_USEDEP}]
+	>=dev-util/cookiecutter-1.6.0[${PYTHON_USEDEP}]
+	>=dev-python/diff-match-patch-20181111[${PYTHON_USEDEP}]
+	dev-python/intervaltree[${PYTHON_USEDEP}]
+	>=dev-python/ipython-4.0[${PYTHON_USEDEP}]
+	~dev-python/jedi-0.17.1[${PYTHON_USEDEP}]
+	dev-python/keyring[${PYTHON_USEDEP}]
+	>=dev-python/nbconvert-4.0[${PYTHON_USEDEP}]
+	>=dev-python/numpydoc-0.6.0[${PYTHON_USEDEP}]
+	~dev-python/parso-0.7.0[${PYTHON_USEDEP}]
+	>=dev-python/pexpect-4.4.0[${PYTHON_USEDEP}]
+	>=dev-python/pickleshare-0.4[${PYTHON_USEDEP}]
+	>=dev-python/psutil-5.3[${PYTHON_USEDEP}]
+	>=dev-python/pygments-2.0[${PYTHON_USEDEP}]
+	>=dev-python/pylint-1.0[${PYTHON_USEDEP}]
+	>=dev-python/python-language-server-0.34.0[${PYTHON_USEDEP}]
+		dev-python/autopep8[${PYTHON_USEDEP}]
+		>=dev-python/flake8-3.8.0[${PYTHON_USEDEP}]
+		>=dev-python/mccabe-0.6.0[${PYTHON_USEDEP}]
+		<dev-python/mccabe-0.7.0[${PYTHON_USEDEP}]
+		>=dev-python/pycodestyle-2.6.0[${PYTHON_USEDEP}]
+		<dev-python/pycodestyle-2.7.0[${PYTHON_USEDEP}]
+		>=dev-python/pydocstyle-2.0.0[${PYTHON_USEDEP}]
+		>=dev-python/pyflakes-2.2.0[${PYTHON_USEDEP}]
+		<dev-python/pyflakes-2.3.0[${PYTHON_USEDEP}]
+		dev-python/pylint[${PYTHON_USEDEP}]
+		>=dev-python/rope-0.10.5[${PYTHON_USEDEP}]
+		dev-python/yapf[${PYTHON_USEDEP}]
+	<dev-python/python-language-server-1.0.0[${PYTHON_USEDEP}]
+	>=dev-python/pyxdg-0.26[${PYTHON_USEDEP}]
+	>=dev-python/pyzmq-17.0.0[${PYTHON_USEDEP}]
+	>=dev-python/qdarkstyle-2.8[${PYTHON_USEDEP}]
+	>=dev-python/qtawesome-0.5.7[${PYTHON_USEDEP}]
+	>=dev-python/qtconsole-4.6.0[${PYTHON_USEDEP}]
+	>=dev-python/QtPy-1.5.0[${PYTHON_USEDEP},svg,webengine]
+	>=dev-python/sphinx-0.6.6[${PYTHON_USEDEP}]
+	>=dev-python/spyder-kernels-1.9.4[${PYTHON_USEDEP}]
+	<dev-python/spyder-kernels-1.10.0[${PYTHON_USEDEP}]
+	dev-python/watchdog[${PYTHON_USEDEP}]
+"
+
+BDEPEND="test? (
+	<dev-python/coverage-5.0[${PYTHON_USEDEP}]
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/flaky[${PYTHON_USEDEP}]
+	dev-python/matplotlib[tk,${PYTHON_USEDEP}]
+	dev-python/mock[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/pillow[${PYTHON_USEDEP}]
+	<dev-python/pytest-5.0[${PYTHON_USEDEP}]
+	<dev-python/pytest-faulthandler-2.0[${PYTHON_USEDEP}]
+	dev-python/pytest-lazy-fixture[${PYTHON_USEDEP}]
+	dev-python/pytest-mock[${PYTHON_USEDEP}]
+	dev-python/pytest-ordering[${PYTHON_USEDEP}]
+	dev-python/pytest-qt[${PYTHON_USEDEP}]
+	dev-python/pytest-xvfb[${PYTHON_USEDEP}]
+	dev-python/pyyaml[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	dev-python/sympy[${PYTHON_USEDEP}]
+)"
+
+# Based on the courtesy of Arfrever
+# This patch removes a call to update-desktop-database during build
+# This fails because access is denied to this command during build
+PATCHES=(
+	"${FILESDIR}/${PN}-4.1.2-build.patch"
+	"${FILESDIR}/${PN}-4.1.2-py3-only.patch"
+	"${FILESDIR}/${PN}-4.1.5-doc-theme-renamed.patch"
+)
+
+DOCS=(
+	"AUTHORS.txt"
+	"Announcements.md"
+	"CHANGELOG.md"
+	"CODE_OF_CONDUCT.md"
+	"CONTRIBUTING.md"
+	"NOTICE.txt"
+	"README.md"
+	"RELEASE.md"
+	"TROUBLESHOOTING.md"
+)
+
+S="${WORKDIR}/${PN}-${MYPV}"
+
+distutils_enable_tests pytest
+distutils_enable_sphinx docs/doc dev-python/sphinx-panels dev-python/pydata-sphinx-theme dev-python/sphinx-multiversion
+
+python_prepare_all() {
+	# move docs into workdir
+	mv ../spyder-docs-${DOCS_PV}* docs || die
+
+	# these deps are packaged separately: dev-python/spyder-kernels, dev-python/python-language-server
+	rm external-deps/* -r || die
+
+	# do not depend on pyqt5<13
+	sed -i -e '/pyqt5/d' \
+		-e '/pyqtwebengine/d' \
+			setup.py || die
+
+	# do not check deps, fails because we removed pyqt5 dependency above
+	sed -i -e 's:test_dependencies_for_spyder_setup_install_requires_in_sync:_&:' \
+		spyder/tests/test_dependencies_in_sync.py || die
+
+	# some tests still depend on QtPy[webkit] which is removed
+	# spyder itself works fine without webkit
+	rm spyder/widgets/tests/test_browser.py || die
+	rm spyder/plugins/onlinehelp/tests/test_pydocgui.py || die
+	rm spyder/plugins/ipythonconsole/tests/test_ipythonconsole.py || die
+	rm spyder/plugins/ipythonconsole/tests/test_ipython_config_dialog.py || die
+	rm spyder/plugins/help/tests/test_widgets.py || die
+	rm spyder/plugins/help/tests/test_plugin.py  || die
+	rm spyder/app/tests/test_mainwindow.py || die
+
+	# skip online test
+	rm spyder/widgets/github/tests/test_github_backend.py || die
+
+	# AssertionError: assert '' == 'This is some test text!'
+	sed -i -e 's:test_tab_copies_find_to_replace:_&:' \
+		spyder/plugins/editor/widgets/tests/test_editor.py || die
+
+	# RuntimeError: Unsafe load() call disabled by Gentoo. See bug #659348
+	sed -i -e 's:test_dependencies_for_binder_in_sync:_&:' \
+		spyder/tests/test_dependencies_in_sync.py || die
+
+	# Fatal Python error: Segmentation fault
+	# sometimes it works, sometimes it segfaults
+	sed -i -e 's:test_copy_path:_&:' \
+		-e 's:test_copy_file:_&:' \
+		-e 's:test_save_file:_&:' \
+		-e 's:test_delete_file:_&:' \
+		spyder/plugins/explorer/widgets/tests/test_explorer.py || die
+
+	# Assertion error, can't connect/remember inside ebuild environment
+	rm spyder/plugins/ipythonconsole/widgets/tests/test_kernelconnect.py || die
+
+	# AssertionError: assert 47 in [43, 44, 45, 46]
+	sed -i -e 's:test_objectexplorer_collection_types:_&:' \
+		spyder/plugins/variableexplorer/widgets/objectexplorer/tests/test_objectexplorer.py  || die
+
+	distutils-r1_python_prepare_all
+}
+
+# Calling pytest directly makes the tests freeze after completing even if successful
+# Exit code is nonzero even upon success, so can't add || die here
+# test results should be checked for success manually
+python_test() {
+	${EPYTHON} runtests.py
+}
+
+pkg_postinst() {
+	xdg_pkg_postinst
+
+	elog "To get additional features, optional runtime dependencies may be installed:"
+		optfeature "2D/3D plotting in the Python and IPython consoles" dev-python/matplotlib
+		optfeature "View and edit DataFrames and Series in the Variable Explorer" dev-python/pandas
+		optfeature "View and edit two or three dimensional arrays in the Variable Explorer" dev-python/numpy
+		optfeature "Symbolic mathematics in the IPython console" dev-python/sympy
+		optfeature "Import Matlab workspace files in the Variable Explorer" sci-libs/scipy
+		optfeature "Run Cython files in the IPython console" dev-python/cython
+		optfeature "The hdf5/h5py plugin" dev-python/h5py
+		optfeature "The line profiler plugin" dev-python/spyder-line-profiler
+		optfeature "The memory profiler plugin" dev-python/spyder-memory-profiler
+		# spyder-autopep8 does not have a release (yet)
+		# and are not compatible with >=spyder-4.0.0 at the moment
+		# optfeature "The autopep8 plugin" dev-python/spyder-autopep8
+		optfeature "Vim key bindings" dev-python/spyder-vim
+		optfeature "Unittest support" dev-python/spyder-unittest
+		optfeature "Jupyter notebook support" dev-python/spyder-notebook
+		optfeature "System terminal inside spyder" dev-python/spyder-terminal
+		# spyder-reports not yet updated to >=spyder-4.0.0
+		# optfeature "Markdown reports using Pweave" dev-python/spyder-reports
+}