[gentoo-commits] gentoo-x86 commit in sci-biology/allpathslg: ChangeLog allpathslg-40063.ebuild allpathslg-35725-r1.ebuild

[Andrey Kislyuk (weaver)]

weaver      11/12/28 03:48:22

  Modified:             ChangeLog
  Added:                allpathslg-40063.ebuild
  Removed:              allpathslg-35725-r1.ebuild
  Log:
  Version bump, remove old
  
  (Portage version: 2.2.0_alpha74/cvs/Linux x86_64)

Revision  Changes    Path
1.6                  sci-biology/allpathslg/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?r1=1.5&r2=1.6

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- ChangeLog	15 Oct 2011 20:04:57 -0000	1.5
+++ ChangeLog	28 Dec 2011 03:48:22 -0000	1.6
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/allpathslg
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.5 2011/10/15 20:04:57 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.6 2011/12/28 03:48:22 weaver Exp $
+
+*allpathslg-40063 (28 Dec 2011)
+
+  28 Dec 2011; Andrey Kislyuk <weaver@g.o>
+  -allpathslg-35725-r1.ebuild, +allpathslg-40063.ebuild:
+  Version bump, remove old
 
   15 Oct 2011; Markos Chandras <hwoarang@g.o> allpathslg-37578.ebuild:
   Stable on amd64 wrt bug #384379



1.1                  sci-biology/allpathslg/allpathslg-40063.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-40063.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-40063.ebuild?rev=1.1&content-type=text/plain

Index: allpathslg-40063.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-40063.ebuild,v 1.1 2011/12/28 03:48:22 weaver Exp $

EAPI=4

inherit autotools flag-o-matic

DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"

LICENSE="as-is"
SLOT="0"
IUSE=""
KEYWORDS="~amd64"

DEPEND="dev-libs/boost
	>=sys-devel/gcc-4.3.3
	sci-biology/vaal"
RDEPEND=""

src_prepare() {
	sed -i 's/-ggdb3//' configure.ac || die
	eautoreconf
}

src_install() {
	einstall || die
	# Provided by sci-biology/vaal
	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
		rm "${D}/usr/bin/$i" || die
	done
}