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commit: 04a3311771e0ce7d6337a0de2371d6ce5f3c9b56 |
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Author: Matthias Maier <tamiko <AT> gentoo <DOT> org> |
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AuthorDate: Thu May 26 00:04:18 2022 +0000 |
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Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org> |
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CommitDate: Thu May 26 01:26:53 2022 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=04a33117 |
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|
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sci-mathematics/petsc: add 3.17.1 |
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|
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Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org> |
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|
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sci-mathematics/petsc/Manifest | 1 + |
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sci-mathematics/petsc/petsc-3.17.1.ebuild | 194 ++++++++++++++++++++++++++++++ |
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2 files changed, 195 insertions(+) |
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|
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diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest |
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index 66543b456f86..a53a6158e9b6 100644 |
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--- a/sci-mathematics/petsc/Manifest |
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+++ b/sci-mathematics/petsc/Manifest |
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@@ -3,3 +3,4 @@ DIST petsc-3.14.6.tar.gz 39719179 BLAKE2B d3047baf87c67eb64ef02c0c54d6313ea06f09 |
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DIST petsc-3.15.0.tar.gz 15976488 BLAKE2B babfbeb05321c9cb2f7d70ef8ffca974a016eae73ca1a3359d9a8d38aa5aa90ff34571169a5711627d738b93f89fdee3d0a0ff1bd0e51cb7300bbb9b0a8675cb SHA512 d1565823d8a5ce5e1c2c576bbe1b4ebf467cef20bbd8e0cf6c303c6c2af2bf902b66c79468f4e125496f9242be4bd6ac162535ee30252cfb902c0d906a6f27c0 |
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DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B 59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb SHA512 8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e |
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DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B 87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9 SHA512 5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655 |
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+DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6 SHA512 8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575 |
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|
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diff --git a/sci-mathematics/petsc/petsc-3.17.1.ebuild b/sci-mathematics/petsc/petsc-3.17.1.ebuild |
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new file mode 100644 |
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index 000000000000..d75bccaa9f8f |
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--- /dev/null |
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+++ b/sci-mathematics/petsc/petsc-3.17.1.ebuild |
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@@ -0,0 +1,194 @@ |
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+# Copyright 1999-2022 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=8 |
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+ |
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+PYTHON_COMPAT=( python3_{8..10} pypy3 ) |
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+ |
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+inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs |
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+ |
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+DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" |
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+HOMEPAGE="https://www.mcs.anl.gov/petsc" |
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+SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" |
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+ |
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+LICENSE="BSD-2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="afterimage boost complex-scalars cxx debug fftw |
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+fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X" |
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+ |
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+# readd sparse when suitesparse-5.6.0 is in tree |
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+# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 ) |
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+# $(use_with sparse suitesparse) \ |
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+RDEPEND=" |
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+ virtual/blas |
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+ virtual/lapack |
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+ |
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+ afterimage? ( media-libs/libafterimage ) |
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+ boost? ( dev-libs/boost ) |
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+ fftw? ( sci-libs/fftw:3.0[mpi?] ) |
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+ hdf5? ( sci-libs/hdf5[mpi?] ) |
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+ hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] ) |
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+ metis? ( >=sci-libs/parmetis-4 ) |
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+ mpi? ( virtual/mpi[cxx?,fortran?] ) |
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+ mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) |
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+ scotch? ( sci-libs/scotch[int64?,mpi?] ) |
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+ superlu? ( >=sci-libs/superlu-5 ) |
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+ X? ( x11-libs/libX11 ) |
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+" |
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+DEPEND=" |
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+ ${RDEPEND} |
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+ ${PYTHON_DEPS} |
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+" |
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+BDEPEND=" |
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+ dev-util/cmake |
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+ sys-apps/which |
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+ virtual/pkgconfig |
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+" |
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+ |
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+# hypre and superlu curretly exclude each other due to missing linking to hypre |
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+# if both are enabled |
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+REQUIRED_USE=" |
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+ afterimage? ( X ) |
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+ complex-scalars? ( !hypre !superlu ) |
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+ hdf5? ( mpi ) |
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+ hypre? ( cxx mpi !superlu ) |
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+ mumps? ( mpi scotch ) |
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+ scotch? ( mpi ) |
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+ superlu? ( !hypre ) |
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+" |
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+PATCHES=( |
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+ "${FILESDIR}/${PN}-3.7.0-disable-rpath.patch" |
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+ "${FILESDIR}"/${PN}-3.16.0-fix_sandbox_violation.patch |
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+) |
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+ |
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+# petsc uses --with-blah=1 and --with-blah=0 to en/disable options |
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+petsc_enable() { |
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+ use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" |
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+} |
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+# add external library: |
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+# petsc_with use_flag libname libdir |
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+# petsc_with use_flag libname include linking_libs |
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+petsc_with() { |
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+ local myuse p=${2:-${1}} |
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+ if use ${1}; then |
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+ myuse="--with-${p}=1" |
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+ if [[ $# -ge 4 ]]; then |
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+ myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" |
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+ shift 3 |
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+ myuse="${myuse} --with-${p}-lib=$@" |
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+ else |
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+ myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" |
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+ fi |
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+ else |
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+ myuse="--with-${p}=0" |
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+ fi |
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+ echo ${myuse} |
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+} |
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+ |
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+# select between configure options depending on use flag |
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+petsc_select() { |
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+ use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" |
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+} |
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+ |
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+src_configure() { |
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+ # bug 548498 |
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+ # PETSc runs mpi processes during configure that result in a sandbox |
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+ # violation by trying to open /proc/mtrr rw. This is not easy to |
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+ # mitigate because it happens in libpciaccess.so called by libhwloc.so, |
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+ # which is used by libmpi.so. |
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+ addpredict /proc/mtrr |
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+ # if mpi is built with knem support it needs /dev/knem too |
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+ addpredict /dev/knem |
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+ |
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+ # configureMPITypes with openmpi-2* insists on accessing the scaling |
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+ # governor rw. |
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+ addpredict /sys/devices/system/cpu/ |
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+ |
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+ # bug 771711 |
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+ # configureMPIEXEC and configureMPITypes access /dev/nvidiactl |
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+ addpredict /dev/nvidiactl |
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+ |
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+ # bug 810841 |
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+ addpredict /dev/kfd |
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+ |
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+ local mylang |
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+ local myopt |
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+ |
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+ use cxx && mylang="cxx" || mylang="c" |
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+ use debug && myopt="debug" || myopt="opt" |
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+ |
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+ # environmental variables expected by petsc during build |
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+ |
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+ export PETSC_DIR="${S}" |
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+ export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" |
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+ |
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+ if use debug; then |
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+ strip-flags |
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+ filter-flags -O* |
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+ fi |
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+ |
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+ tc-export AR RANLIB |
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+ |
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+ # C Support on CXX builds is enabled if possible i.e. when not using |
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+ # complex scalars (no complex type for both available at the same time) |
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+ |
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+ econf \ |
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+ scrollOutput=1 \ |
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+ AR="${AR}" \ |
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+ CFLAGS="${CFLAGS} -fPIC" \ |
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+ CPPFLAGS="${CPPFLAGS}" \ |
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+ CXXFLAGS="${CXXFLAGS} -fPIC" \ |
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+ CXXOPTFLAGS="${CXXFLAGS} -fPIC" \ |
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+ FCFLAGS="${FCFLAGS} -fPIC" \ |
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+ FFLAGS="${FFLAGS} -fPIC" \ |
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+ LDFLAGS="${LDFLAGS}" \ |
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+ MAKEFLAGS="${MAKEFLAGS}" \ |
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+ RANLIB="${RANLIB}" \ |
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+ --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ |
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+ --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ |
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+ --with-clanguage="${mylang}" \ |
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+ --with-cmake:BOOL=1 \ |
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+ --with-gnu-compilers \ |
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+ --with-imagemagick=0 \ |
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+ --with-matlab=0 \ |
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+ --with-petsc-arch="${PETSC_ARCH}" \ |
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+ --with-precision=double \ |
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+ --with-python=0 \ |
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+ --with-shared-libraries \ |
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+ --with-single-library \ |
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+ --with-windows-graphics=0 \ |
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+ $(petsc_enable debug debugging) \ |
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+ $(petsc_enable fortran) \ |
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+ $(petsc_enable mpi) \ |
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+ $(petsc_enable mpi mpi-compilers) \ |
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+ $(petsc_enable threads pthread) \ |
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+ $(petsc_select complex-scalars scalar-type complex real) \ |
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+ $(petsc_select mpi cc mpicc $(tc-getCC)) \ |
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+ $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ |
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+ $(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \ |
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+ $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \ |
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+ $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \ |
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+ $(petsc_with scotch ptscotch /usr/include/scotch [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ |
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+ $(petsc_with mumps scalapack /usr/include/scalapack -lscalapack) \ |
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+ $(use cxx && ! use complex-scalars && echo "--with-c-support=1") \ |
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+ $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ |
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+ $(use int64 && echo "--with-index-size=64") \ |
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+ $(use_with boost) \ |
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+ $(use_with fftw) \ |
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+ $(use_with hdf5) \ |
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+ $(use_with mumps mumps /usr/include [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ |
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+ $(use_with X x) \ |
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+ $(use_with X x11) |
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+} |
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+ |
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+src_install() { |
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+ emake DESTDIR="${ED}" install |
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+ |
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+ # add PETSC_DIR to environmental variables |
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+ cat >> 99petsc <<- EOF |
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+ PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc |
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+ LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib |
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+ EOF |
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+ doenvd 99petsc |
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+} |