[gentoo-commits] proj/sci:master commit in: sci-biology/mgblast/

[Andrew Ammerlaan]

commit:     2175a5c65e6a29e243f25f7d1e237874d08020f0
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Aug 31 09:28:05 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Aug 31 09:28:05 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2175a5c6

sci-biology/mgblast: remove last-rited pack

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/mgblast/metadata.xml       | 12 ------------
 sci-biology/mgblast/mgblast-0.1.ebuild | 34 ----------------------------------
 2 files changed, 46 deletions(-)

diff --git a/sci-biology/mgblast/metadata.xml b/sci-biology/mgblast/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/mgblast/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/mgblast/mgblast-0.1.ebuild b/sci-biology/mgblast/mgblast-0.1.ebuild
deleted file mode 100644
index 9eb877c27..000000000
--- a/sci-biology/mgblast/mgblast-0.1.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-DESCRIPTION="Customized version of megablast from TIGR Gene Indices project"
-HOMEPAGE="https://web.archive.org/web/20140726030702/http://compbio.dfci.harvard.edu/tgi/software/"
-SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/mgblast.tar.gz -> ${P}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS=""
-
-DEPEND="sci-biology/ncbi-tools"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}"
-
-# mgblast needs old version of ncbi-tools unpacked and compiled during its own compilation
-# from newer tools you need to include blfmtutl.h but the next error is no go for me:
-#   mgblast.c:2205: error: too few arguments to function ‘BXMLBuildOneQueryIteration’
-
-# Quoting from mgblast/README: the present package was built and tested only with the release 20060507
-
-src_prepare(){
-	# mgblast cannot be compiled against newer ncbi-tools but let's try
-	mv makefile Makefile 2>/dev/null || true
-	sed -i -e 's#/usr/local/projects/tgi/ncbitoolkit/ncbi#/usr#' \
-		-e's#NCBIDIR = /mylocal/src/ncbi#NCBIDIR = /usr#' \
-		-e's#NCBI_INCDIR = .*#NCBI_INCDIR = /usr/include/ncbi#' \
-		-e 's#NCBI_LIBDIR = .*#NCBI_LIBDIR = /usr/lib#' \
-		-e "s#-I-#-iquote#" Makefile || die # a PATH to NCBI-TOOLKIT (/usr/lib) while NOT /usr/lib/ncbi-tools++ !
-	default
-}