From: | "Patrick Lauer (patrick)" <patrick@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-7.54.ebuild |
Date: | Sun, 01 Mar 2009 17:15:22 |
Message-Id: | E1LdpG4-0004cT-KK@stork.gentoo.org |
1 | patrick 09/03/01 17:15:20 |
2 | |
3 | Modified: ChangeLog |
4 | Added: t-coffee-7.54.ebuild |
5 | Log: |
6 | Bump to 7.54. Closes #258081. |
7 | (Portage version: 2.2_rc23/cvs/Linux x86_64) |
8 | |
9 | Revision Changes Path |
10 | 1.35 sci-biology/t-coffee/ChangeLog |
11 | |
12 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.35&view=markup |
13 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.35&content-type=text/plain |
14 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.34&r2=1.35 |
15 | |
16 | Index: ChangeLog |
17 | =================================================================== |
18 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v |
19 | retrieving revision 1.34 |
20 | retrieving revision 1.35 |
21 | diff -u -r1.34 -r1.35 |
22 | --- ChangeLog 6 Sep 2008 11:29:59 -0000 1.34 |
23 | +++ ChangeLog 1 Mar 2009 17:15:20 -0000 1.35 |
24 | @@ -1,6 +1,11 @@ |
25 | # ChangeLog for sci-biology/t-coffee |
26 | -# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 |
27 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.34 2008/09/06 11:29:59 markusle Exp $ |
28 | +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.35 2009/03/01 17:15:20 patrick Exp $ |
30 | + |
31 | +*t-coffee-7.54 (01 Mar 2009) |
32 | + |
33 | + 01 Mar 2009; Patrick Lauer <patrick@g.o> +t-coffee-7.54.ebuild: |
34 | + Bump to 7.54. Closes #258081. |
35 | |
36 | *t-coffee-6.82 (06 Sep 2008) |
37 | |
38 | |
39 | |
40 | |
41 | 1.1 sci-biology/t-coffee/t-coffee-7.54.ebuild |
42 | |
43 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-7.54.ebuild?rev=1.1&view=markup |
44 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-7.54.ebuild?rev=1.1&content-type=text/plain |
45 | |
46 | Index: t-coffee-7.54.ebuild |
47 | =================================================================== |
48 | # Copyright 1999-2009 Gentoo Foundation |
49 | # Distributed under the terms of the GNU General Public License v2 |
50 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-7.54.ebuild,v 1.1 2009/03/01 17:15:20 patrick Exp $ |
51 | |
52 | inherit toolchain-funcs flag-o-matic |
53 | |
54 | DESCRIPTION="A multiple sequence alignment package" |
55 | LICENSE="GPL-2" |
56 | HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" |
57 | SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz" |
58 | |
59 | SLOT="0" |
60 | IUSE="" |
61 | KEYWORDS="~amd64 ~ppc ~x86" |
62 | |
63 | DEPEND="sci-biology/clustalw" |
64 | RDEPEND="${DEPEND}" |
65 | |
66 | TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}" |
67 | S="${TCDIR}/t_coffee_source" |
68 | |
69 | die_compile() { |
70 | echo |
71 | eerror "If you experience an internal compiler error (consult the above" |
72 | eerror "messages), try compiling t-coffee using very modest compiler flags." |
73 | eerror "See bug #114745 on the Gentoo Bugzilla for more details." |
74 | die "Compilation failed" |
75 | } |
76 | |
77 | src_compile() { |
78 | [[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time |
79 | [[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time |
80 | CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile |
81 | } |
82 | |
83 | src_install() { |
84 | dobin t_coffee || die "Failed to install program." |
85 | |
86 | insinto /usr/share/${PN}/lib/html |
87 | doins "${TCDIR}"/html/* \ |
88 | || die "Failed to install Web interface files." |
89 | |
90 | cd "${TCDIR}"/doc |
91 | dodoc aln_compare.doc.txt seq_reformat.doc.txt \ |
92 | t_coffee_technical.txt t_coffee_tutorial.txt \ |
93 | || die "Failed to install text documentation." |
94 | |
95 | dohtml t_coffee_technical.htm t_coffee_tutorial.htm \ |
96 | || die "Failed to install HTML documentation." |
97 | |
98 | insinto /usr/share/doc/${PF} |
99 | doins t_coffee_technical.doc t_coffee_tutorial.doc \ |
100 | || die "Failed to install DOC documentation." |
101 | |
102 | insinto /usr/share/${PN}/example |
103 | doins "${TCDIR}"/example/* \ |
104 | || die "Failed to install example files." |
105 | } |