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commit: 76473186d32683782345c0271a225416c49e7d27 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Fri Jul 4 13:41:22 2014 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Fri Jul 4 13:41:22 2014 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=76473186 |
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|
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sci-biology/Atlas-Link: noted dependence, see bug #516366 |
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|
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--- |
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sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild | 26 ++++++++++++++++++++++++++ |
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sci-biology/Atlas-Link/ChangeLog | 10 ++++++++++ |
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sci-biology/Atlas-Link/metadata.xml | 9 +++++++++ |
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3 files changed, 45 insertions(+) |
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|
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diff --git a/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild |
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new file mode 100644 |
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index 0000000..bb15e64 |
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--- /dev/null |
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+++ b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild |
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@@ -0,0 +1,26 @@ |
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+# Copyright 1999-2014 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=5 |
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+ |
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+inherit perl-module |
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+ |
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+DESCRIPTION="Links and orients genome sequence contigs using mate-pair information or superscaffolds .agp files" |
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+HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-link" |
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+SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas_Link/Atlas-link.tar.gz" |
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+ |
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+LICENSE="HGSC-BCM" |
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+SLOT="0" |
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+KEYWORDS="" |
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+IUSE="" |
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+ |
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+# https://github.com/gitpan/Algorithm-ClusterPoints |
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+DEPEND="dev-lang/perl |
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+ dev-perl/Graph |
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+ dev-perl/Algorithm-ClusterPoints |
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+ dev-perl/XML-DOM |
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+ dev-perl/Statistics-Descriptive" |
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+RDEPEND="${DEPEND}" |
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+ |
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+S="${WORKDIR}"/Atlas-link |
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|
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diff --git a/sci-biology/Atlas-Link/ChangeLog b/sci-biology/Atlas-Link/ChangeLog |
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new file mode 100644 |
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index 0000000..cb92c11 |
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--- /dev/null |
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+++ b/sci-biology/Atlas-Link/ChangeLog |
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@@ -0,0 +1,10 @@ |
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+# ChangeLog for sci-biology/Atlas-Link |
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+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: $ |
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+ |
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+*Atlas-Link-0.01 (04 Jul 2014) |
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+ |
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+ 04 Jul 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ +Atlas-Link-0.01.ebuild, +metadata.xml: |
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+ sci-biology/Atlas-Link: noted dependence, see bug #516366 |
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+ |
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|
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diff --git a/sci-biology/Atlas-Link/metadata.xml b/sci-biology/Atlas-Link/metadata.xml |
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new file mode 100644 |
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index 0000000..2bc8930 |
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--- /dev/null |
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+++ b/sci-biology/Atlas-Link/metadata.xml |
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@@ -0,0 +1,9 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <herd>sci-biology</herd> |
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+ <maintainer> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+</pkgmetadata> |
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