[gentoo-commits] proj/sci:master commit in: sci-biology/BBmap/

[Martin Mokrejs]

commit:     05b20520d7eb65ba90e9582b7315c65d2f4234c1
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 19:33:34 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 19:33:34 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=05b20520

sci-biology/BBmap: a skeleton for a new package, needs help from java team for sure

---
 sci-biology/BBmap/BBmap-31.40.ebuild | 25 +++++++++++++++++++++++++
 sci-biology/BBmap/ChangeLog          | 11 +++++++++++
 sci-biology/BBmap/metadata.xml       |  9 +++++++++
 3 files changed, 45 insertions(+)

diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild b/sci-biology/BBmap/BBmap-31.40.ebuild
new file mode 100644
index 0000000..959d062
--- /dev/null
+++ b/sci-biology/BBmap/BBmap-31.40.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2 java-ant-2
+
+DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/FASTQ conversion"
+HOMEPAGE="http://sourceforge.net/projects/bbmap/"
+SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz"
+#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+	>=virtual/jdk-1.7
+	dev-java/ant-core"
+RDEPEND="${DEPEND}
+	>=virtual/jre-1.7"
+
+S="${WORKDIR}"/bbmap

diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog
new file mode 100644
index 0000000..9a2750a
--- /dev/null
+++ b/sci-biology/BBmap/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/BBmap
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*BBmap-31.40 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +BBmap-31.40.ebuild, +metadata.xml:
+  sci-biology/BBmap: a skeleton for a new package, needs help from java team
+  for sure
+

diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/BBmap/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>