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commit: 35b70ea666aeb1b55743d6c6d57e5cb7118cab58 |
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Author: Horea Christian <horea.christ <AT> yandex <DOT> com> |
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AuthorDate: Sun Jan 6 15:07:30 2019 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Sun Jan 6 15:08:55 2019 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=35b70ea6 |
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|
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sci-biology/samri: version bump |
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|
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Package-Manager: Portage-2.3.52, Repoman-2.3.12 |
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Signed-off-by: Horea Christian <horea.christ <AT> yandex.com> |
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|
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sci-biology/samri/samri-0.2.ebuild | 56 ++++++++++++++++++++++++++++++++++++++ |
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1 file changed, 56 insertions(+) |
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|
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diff --git a/sci-biology/samri/samri-0.2.ebuild b/sci-biology/samri/samri-0.2.ebuild |
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new file mode 100644 |
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index 000000000..3b8f06a60 |
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--- /dev/null |
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+++ b/sci-biology/samri/samri-0.2.ebuild |
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@@ -0,0 +1,56 @@ |
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+# Copyright 1999-2019 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+PYTHON_COMPAT=( python{2_7,3_4,3_5} ) |
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+ |
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+inherit distutils-r1 |
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+ |
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+DESCRIPTION="Small Animal Magnetic Resonance Imaging" |
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+HOMEPAGE="https://github.com/IBT-FMI/SAMRI" |
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+SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" |
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+ |
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+LICENSE="GPL-3" |
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+SLOT="0" |
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+IUSE="atlases labbookdb test" |
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+KEYWORDS="~amd64 ~x86" |
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+ |
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+# Numpy dependency to circumvent scikits_learn dependency bug: |
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+# https://bugs.gentoo.org/653052 |
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+DEPEND="test? ( sci-biology/samri_bindata )" |
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+RDEPEND=" |
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+ dev-python/argh[${PYTHON_USEDEP}] |
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+ dev-python/joblib[${PYTHON_USEDEP}] |
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+ >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}] |
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+ >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] |
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+ dev-python/pandas[${PYTHON_USEDEP}] |
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+ dev-python/seaborn[${PYTHON_USEDEP}] |
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+ dev-python/statsmodels[${PYTHON_USEDEP}] |
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+ >=sci-biology/fsl-5.0.9 |
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+ sci-biology/bru2nii |
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+ atlases? ( sci-biology/mouse-brain-atlases ) |
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+ labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) |
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+ sci-libs/nibabel[${PYTHON_USEDEP}] |
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+ >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] |
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+ >=sci-libs/nipype-0.14.0_pre20170830[${PYTHON_USEDEP}] |
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+ sci-libs/pybids[${PYTHON_USEDEP}] |
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+ sci-libs/scipy[${PYTHON_USEDEP}] |
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+ sci-biology/ants |
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+ sci-biology/afni |
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+ sci-biology/nilearn[${PYTHON_USEDEP}] |
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+ " |
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+ |
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+S="${WORKDIR}/SAMRI-${PV}" |
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+ |
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+python_test() { |
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+ distutils_install_for_testing |
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+ export MPLBACKEND="agg" |
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+ export PATH=${TEST_DIR}/scripts:$PATH |
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+ export PYTHONIOENCODING=utf-8 |
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+ ./test_scripts.sh || die "Test scripts failed." |
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+ sed -i -e \ |
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+ "/def test_bru2bids():/i@×××××××××××.skip('Removed in full test suite, as this is already tested in `test_scripts.sh`')" \ |
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+ samri/pipelines/tests/test_repos.py || die |
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+ pytest -vv || die |
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+} |