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commit: 583d5ee61844e8de863d6133fe83c2fbb00b4bfc |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Feb 28 16:25:27 2012 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Feb 28 16:25:27 2012 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=583d5ee6 |
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|
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sci-biology/gbrowse-2.48: added dependency on <=sci-biology/primer3-2, per http://generic-model-organism-system-database.450254.n5.nabble.com/PrimerDesigner-working-in-2-40-tp4724773p5479669.html |
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|
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(Portage version: 2.1.10.49/git/Linux x86_64, unsigned Manifest commit) |
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|
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--- |
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sci-biology/gbrowse/ChangeLog | 8 ++++++++ |
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sci-biology/gbrowse/gbrowse-2.45.ebuild | 2 +- |
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.../{gbrowse-2.45.ebuild => gbrowse-2.48.ebuild} | 3 ++- |
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3 files changed, 11 insertions(+), 2 deletions(-) |
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|
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diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLog |
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index 41e2334..b0949c5 100644 |
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--- a/sci-biology/gbrowse/ChangeLog |
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+++ b/sci-biology/gbrowse/ChangeLog |
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@@ -2,6 +2,14 @@ |
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# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $ |
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|
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+*gbrowse-2.48 (28 Feb 2012) |
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+ |
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+ 28 Feb 2012; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ gbrowse-2.45.ebuild, +gbrowse-2.48.ebuild: |
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+ added dependency on <=sci-biology/primer3-2, per |
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+ http://generic-model-organism-system-database.450254.n5.nabble.com/PrimerDesi |
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+ gner-working-in-2-40-tp4724773p5479669.html |
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+ |
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*gbrowse-2.45 (17 Jan 2012) |
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|
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17 Jan 2012; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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|
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diff --git a/sci-biology/gbrowse/gbrowse-2.45.ebuild b/sci-biology/gbrowse/gbrowse-2.45.ebuild |
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index f914844..4b3f3b3 100644 |
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--- a/sci-biology/gbrowse/gbrowse-2.45.ebuild |
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+++ b/sci-biology/gbrowse/gbrowse-2.45.ebuild |
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@@ -44,7 +44,7 @@ DEPEND="!!sci-biology/GBrowse |
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virtual/perl-Digest-MD5 |
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>=dev-perl/CGI-Session-4.03 |
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dev-perl/Statistics-Descriptive |
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- >=dev-perl/Bio-Graphics-1.97 |
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+ >=dev-perl/Bio-Graphics-2.26 |
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>=dev-perl/JSON-2.510.0 |
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dev-perl/TermReadKey |
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dev-perl/libwww-perl |
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|
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diff --git a/sci-biology/gbrowse/gbrowse-2.45.ebuild b/sci-biology/gbrowse/gbrowse-2.48.ebuild |
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similarity index 99% |
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copy from sci-biology/gbrowse/gbrowse-2.45.ebuild |
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copy to sci-biology/gbrowse/gbrowse-2.48.ebuild |
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index f914844..754cc9e 100644 |
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--- a/sci-biology/gbrowse/gbrowse-2.45.ebuild |
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+++ b/sci-biology/gbrowse/gbrowse-2.48.ebuild |
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@@ -44,7 +44,7 @@ DEPEND="!!sci-biology/GBrowse |
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virtual/perl-Digest-MD5 |
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>=dev-perl/CGI-Session-4.03 |
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dev-perl/Statistics-Descriptive |
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- >=dev-perl/Bio-Graphics-1.97 |
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+ >=dev-perl/Bio-Graphics-2.26 |
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>=dev-perl/JSON-2.510.0 |
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dev-perl/TermReadKey |
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dev-perl/libwww-perl |
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@@ -86,6 +86,7 @@ RDEPEND="${DEPEND} |
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postgres? ( >=dev-perl/Bio-DB-Das-Chado-0.32 ) |
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>=dev-perl/Bio-SamTools-1.29 |
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>=dev-perl/Bio-BigFile-1.06 |
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+ <=sci-biology/primer3-2 |
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)" |
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|
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src_prepare() { |
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