[gentoo-commits] gentoo-x86 commit in sci-biology/paml: ChangeLog paml-4.3b.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/12/28 19:43:38

  Modified:             ChangeLog
  Added:                paml-4.3b.ebuild
  Log:
  Version bump
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.9                  sci-biology/paml/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.9&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.9&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?r1=1.8&r2=1.9

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -r1.8 -r1.9
--- ChangeLog	13 Nov 2009 17:12:58 -0000	1.8
+++ ChangeLog	28 Dec 2009 19:43:37 -0000	1.9
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/paml
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.8 2009/11/13 17:12:58 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.9 2009/12/28 19:43:37 weaver Exp $
+
+*paml-4.3b (28 Dec 2009)
+
+  28 Dec 2009; Andrey Kislyuk <weaver@g.o> +paml-4.3b.ebuild:
+  Version bump
 
   13 Nov 2009; Andrey Kislyuk <weaver@g.o> -paml-4.2b.ebuild,
   -paml-4b.ebuild:



1.1                  sci-biology/paml/paml-4.3b.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/paml-4.3b.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/paml-4.3b.ebuild?rev=1.1&content-type=text/plain

Index: paml-4.3b.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.3b.ebuild,v 1.1 2009/12/28 19:43:37 weaver Exp $

EAPI="2"

inherit toolchain-funcs

MY_P="${PN}43"
DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"

LICENSE="free-noncomm"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""

RDEPEND=""
DEPEND="${RDEPEND}"

S="${WORKDIR}/${MY_P}"

src_prepare() {
	sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die
}

src_compile() {
	cd src
	emake \
		-f Makefile.UNIX \
		CC="$(tc-getCC)" \
		CFLAGS="${CFLAGS}" \
		|| die "make failed"
}

src_install() {
	pushd "${S}"/src
	dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die
	popd
	dodoc README.txt doc/*
	insinto /usr/share/${PN}/control
	doins *.ctl || die "Failed to install control files"
	insinto /usr/share/${PN}/dat
	doins stewart* *.dat dat/* || die "Failed to install data files"
	insinto /usr/share/${PN}
	doins -r examples/ || die "Failed to install examples"
}