[gentoo-commits] proj/sci:ccp4 commit in: sci-libs/ssm/files/, sci-libs/ssm/

[Justin Lecher]

commit:     fc09720cd90ccc7e9295697f21531383498ed31a
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu May 30 13:26:01 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu May 30 13:26:01 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fc09720c

sci-libs/ssm: Version Bump

Package-Manager: portage-2.2.0_alpha177

---
 sci-libs/ssm/ChangeLog              | 37 ++++++++++++++++++++++++++++
 sci-libs/ssm/files/ssm-1.3-pc.patch | 49 +++++++++++++++++++++++++++++++++++++
 sci-libs/ssm/metadata.xml           | 11 +++++++++
 sci-libs/ssm/ssm-1.3.ebuild         | 30 +++++++++++++++++++++++
 4 files changed, 127 insertions(+)

diff --git a/sci-libs/ssm/ChangeLog b/sci-libs/ssm/ChangeLog
new file mode 100644
index 0000000..e26d57a
--- /dev/null
+++ b/sci-libs/ssm/ChangeLog
@@ -0,0 +1,37 @@
+# ChangeLog for sci-libs/ssm
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ssm/ChangeLog,v 1.8 2012/05/21 19:14:47 ranger Exp $
+
+*ssm-1.3 (30 May 2013)
+
+  30 May 2013; Justin Lecher <jlec@g.o> +ssm-1.3.ebuild,
+  +files/ssm-1.3-pc.patch, +metadata.xml:
+  Version Bump
+
+  21 May 2012; Brent Baude <ranger@g.o> ssm-1.1.ebuild:
+  Marking ssm-1.1 ppc for bug 413815
+
+  15 Aug 2011; Kacper Kowalik <xarthisius@g.o> ssm-1.1.ebuild:
+  Marked ~ppc for sci-chemistry/pointless
+
+  01 Aug 2011; Markus Meier <maekke@g.o> ssm-1.1.ebuild:
+  x86 stable, bug #375905
+
+  24 Jul 2011; Markos Chandras <hwoarang@g.o> ssm-1.1.ebuild:
+  Stable on amd64 wrt bug #375905
+
+  23 Jul 2011; Justin Lecher <jlec@g.o> ssm-1.1.ebuild:
+  Add blocker against <sci-libs/ccp4-libs-6.1.3-r10, #376131
+
+  19 Jul 2011; Justin Lecher <jlec@g.o> ssm-1.1.ebuild:
+  Keyworded for *-linux prefix
+
+  16 Jul 2011; Justin Lecher <jlec@g.o> files/ssm-1.1-pc.patch:
+  Correct pc file because include/ssm was missing in Cflags
+
+*ssm-1.1 (16 Jul 2011)
+
+  16 Jul 2011; Justin Lecher <jlec@g.o> +ssm-1.1.ebuild,
+  +files/ssm-1.1-mmdb.patch, +files/ssm-1.1-pc.patch, +metadata.xml:
+  Import from sci-overlay
+

diff --git a/sci-libs/ssm/files/ssm-1.3-pc.patch b/sci-libs/ssm/files/ssm-1.3-pc.patch
new file mode 100644
index 0000000..271a7a7
--- /dev/null
+++ b/sci-libs/ssm/files/ssm-1.3-pc.patch
@@ -0,0 +1,49 @@
+ Makefile.am  |  3 +++
+ configure.ac |  5 ++++-
+ ssm.pc.in    | 12 ++++++++++++
+ 3 files changed, 19 insertions(+), 1 deletion(-)
+
+diff --git a/Makefile.am b/Makefile.am
+index ae84dd1..018b4d1 100644
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -1,5 +1,8 @@
+ ACLOCAL_AMFLAGS = -I m4
+ 
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = ssm.pc
++
+ lib_LTLIBRARIES = libssm.la
+ libssm_la_SOURCES = ssm_superpose.cpp ssm_csia.cpp ssm_vxedge.cpp \
+ 		    ssm_align.cpp ssm_malign.cpp ssm_graph.cpp
+diff --git a/configure.ac b/configure.ac
+index 25fc0ab..2d73ac4 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -33,4 +33,7 @@ if test "x$enable_ccp4" = "xyes"; then
+ fi
+ AM_CONDITIONAL([USE_LIBCCP4], [test "x$enable_ccp4" = "xyes"])
+ 
+-AC_OUTPUT([Makefile])
++AC_OUTPUT([
++	Makefile
++	ssm.pc
++])
+diff --git a/ssm.pc.in b/ssm.pc.in
+new file mode 100644
+index 0000000..a6ac635
+--- /dev/null
++++ b/ssm.pc.in
+@@ -0,0 +1,12 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@/ssm
++
++Name: ssm
++Description: Macromolecular superposition library
++Version: @VERSION@
++Requires: mmdb
++Conflicts:
++Libs: -L${libdir} -lssm
++Cflags: -I${includedir}

diff --git a/sci-libs/ssm/metadata.xml b/sci-libs/ssm/metadata.xml
new file mode 100644
index 0000000..cd4344f
--- /dev/null
+++ b/sci-libs/ssm/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <maintainer>
+    <email>sci@g.o</email>
+  </maintainer>
+  <use>
+    <flag name="ccp4">Enable necessary ouput to use superpose with ccp4</flag>
+  </use>
+</pkgmetadata>

diff --git a/sci-libs/ssm/ssm-1.3.ebuild b/sci-libs/ssm/ssm-1.3.ebuild
new file mode 100644
index 0000000..348851d
--- /dev/null
+++ b/sci-libs/ssm/ssm-1.3.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ssm/ssm-1.1.ebuild,v 1.7 2012/05/21 19:14:47 ranger Exp $
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils
+
+DESCRIPTION="A macromolecular coordinate superposition library"
+HOMEPAGE="https://launchpad.net/ssm"
+SRC_URI="ftp://ftp.ccp4.ac.uk/opensource/${P}.tar.bz2"
+
+LICENSE="GPL-3 LGPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+ccp4 static-libs"
+
+DEPEND="
+	>=sci-libs/mmdb-1.23
+	ccp4? ( sci-libs/libccp4 )"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/${P}-pc.patch )
+
+src_configure() {
+	local myeconfargs=( $(use_enable ccp4) )
+	autotools-utils_src_configure
+}