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commit: 90360a7c028f7f1eccfbcf57b10428481a003ac8 |
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Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org> |
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AuthorDate: Thu May 2 18:47:53 2019 +0000 |
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Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org> |
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CommitDate: Thu May 2 18:47:53 2019 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=90360a7c |
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|
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sci-chemistry/ball: remove last rited package |
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|
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Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org> |
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|
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sci-chemistry/ball/Manifest | 1 - |
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sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild | 100 ------ |
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.../ball/files/ball-1.5.0-gnuinstalldirs.patch | 355 --------------------- |
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sci-chemistry/ball/metadata.xml | 36 --- |
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4 files changed, 492 deletions(-) |
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|
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diff --git a/sci-chemistry/ball/Manifest b/sci-chemistry/ball/Manifest |
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deleted file mode 100644 |
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index 71590f52041..00000000000 |
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--- a/sci-chemistry/ball/Manifest |
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+++ /dev/null |
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@@ -1 +0,0 @@ |
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-DIST ball-1.5.0_pre20180419.tar.gz 37577697 BLAKE2B 44db256dad4703115ca381c4bc7f8393657d9d205b78c9ed55328769129dc38a2898d838bea2beb2e1e5e25184944a5724dd808917928f79c41b8216d98a6677 SHA512 a5cf9680468636c6b3de950f058d1bedb9c2d9ef7b5ba1af60e4b79fab3e6bae9cd814ec3238703075ae66c5a637d1ba8281ce7f11ac842133af91c000c983c3 |
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|
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diff --git a/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild b/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild |
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deleted file mode 100644 |
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index b4d49d1fb14..00000000000 |
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--- a/sci-chemistry/ball/ball-1.5.0_pre20180419.ebuild |
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+++ /dev/null |
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@@ -1,100 +0,0 @@ |
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-# Copyright 1999-2018 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=6 |
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- |
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-PYTHON_COMPAT=( python2_7 ) |
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-COMMIT=e80b5e2021a72faa36bf9e35207998d4590f2cf4 |
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-inherit cmake-utils python-single-r1 |
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- |
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-DESCRIPTION="Biochemical Algorithms Library" |
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-HOMEPAGE="https://github.com/BALL-Project/ball" |
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-SRC_URI="https://github.com/BALL-Project/${PN}/archive/${COMMIT}.tar.gz -> ${P}.tar.gz" |
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- |
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-SLOT="0" |
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-LICENSE="LGPL-2 fftw? ( GPL-3 ) openbabel? ( GPL-3 )" |
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-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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-IUSE="cuda doc +fftw +gui lpsolve mpi openbabel +python svm test threads webengine" |
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- |
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-REQUIRED_USE=" |
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- python? ( ${PYTHON_REQUIRED_USE} ) |
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- threads? ( fftw ) |
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- webengine? ( gui ) |
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-" |
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- |
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-RDEPEND=" |
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- dev-cpp/eigen:3 |
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- dev-libs/boost:= |
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- dev-qt/qtcore:5 |
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- dev-qt/qtnetwork:5 |
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- dev-qt/qtxml:5 |
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- media-libs/glew:0= |
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- virtual/opengl |
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- x11-libs/libX11 |
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- cuda? ( dev-util/nvidia-cuda-toolkit ) |
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- fftw? ( sci-libs/fftw:3.0=[threads?] ) |
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- gui? ( |
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- dev-qt/qtgui:5 |
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- dev-qt/qtopengl:5 |
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- dev-qt/qtprintsupport:5 |
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- dev-qt/qttest:5 |
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- dev-qt/qtwidgets:5 |
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- ) |
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- lpsolve? ( sci-mathematics/lpsolve ) |
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- mpi? ( virtual/mpi ) |
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- openbabel? ( sci-chemistry/openbabel:= ) |
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- python? ( ${PYTHON_DEPS} ) |
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- svm? ( sci-libs/libsvm:= ) |
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- webengine? ( |
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- dev-qt/qtwebchannel:5 |
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- dev-qt/qtwebengine:5[widgets] |
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- ) |
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-" |
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-DEPEND="${RDEPEND} |
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- sys-devel/bison |
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- virtual/yacc |
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- doc? ( app-doc/doxygen[dot] ) |
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- gui? ( dev-qt/linguist-tools:5 ) |
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- python? ( dev-python/sip ) |
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-" |
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- |
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-S="${WORKDIR}"/${PN}-${COMMIT} |
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- |
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-PATCHES=( "${FILESDIR}"/${PN}-1.5.0-gnuinstalldirs.patch ) |
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- |
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-RESTRICT="test" |
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- |
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-pkg_setup() { |
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- use python && python-single-r1_pkg_setup |
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-} |
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- |
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-src_configure() { |
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- local mycmakeargs=( |
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- -DUPDATE_TRANSLATIONS=ON |
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- -DCMAKE_DISABLE_FIND_PACKAGE_LATEX=ON |
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- -DCMAKE_INSTALL_DOCDIR=/usr/share/doc/${PF} |
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- -DUSE_CUDA=$(usex cuda) |
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- -DCMAKE_DISABLE_FIND_PACKAGE_Doxygen=$(usex !doc) |
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- -DCMAKE_DISABLE_FIND_PACKAGE_FFTW=$(usex !fftw) |
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- -DUSE_LPSOLVE=$(usex lpsolve) |
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- -DUSE_MPI=$(usex mpi) |
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- -DREQUIRE_MPI=$(usex mpi) |
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- -DCMAKE_DISABLE_FIND_PACKAGE_OpenBabel2=$(usex !openbabel) |
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- -DBALL_PYTHON_SUPPORT=$(usex python) |
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- -DBALL_HAS_VIEW=$(usex gui) |
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- -DUSE_LIBSVM=$(usex svm) |
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- -DUSE_FFTW_THREADS=$(usex threads) |
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- -DUSE_QTWEBENGINE=$(usex webengine) |
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- ) |
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- |
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- if use fftw || use openbabel; then |
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- mycmakeargs+=( -DBALL_LICENSE=GPL ) |
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- fi |
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- |
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- cmake-utils_src_configure |
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-} |
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- |
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-src_compile() { |
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- cmake-utils_src_compile |
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- use test && cmake-utils_src_make build_tests |
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-} |
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|
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diff --git a/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch b/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch |
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deleted file mode 100644 |
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index f9fedc58bb6..00000000000 |
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--- a/sci-chemistry/ball/files/ball-1.5.0-gnuinstalldirs.patch |
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+++ /dev/null |
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@@ -1,355 +0,0 @@ |
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-From a8cade5ed7090c704aed53871fb664a0fe07af54 Mon Sep 17 00:00:00 2001 |
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-From: Andreas Sturmlechner <andreas.sturmlechner@×××××.com> |
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-Date: Sat, 21 Apr 2018 20:07:09 +0200 |
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-Subject: [PATCH 1/3] Use GNUInstallDirs |
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- |
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---- |
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- CMakeLists.txt | 30 ++++++++++++++++-------------- |
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- 1 file changed, 16 insertions(+), 14 deletions(-) |
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- |
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-diff --git a/CMakeLists.txt b/CMakeLists.txt |
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-index be57fe90c..1a54446fb 100644 |
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---- a/CMakeLists.txt |
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-+++ b/CMakeLists.txt |
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-@@ -65,6 +65,8 @@ INCLUDE(BALLCompilerSpecific) |
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- # Determine BALL configuration |
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- INCLUDE(BALLConfiguration) |
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- |
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-+INCLUDE(GNUInstallDirs) |
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-+ |
158 |
- # We do not have a Component-based installer in MacOS |
159 |
- IF(NOT APPLE) |
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- INCLUDE(BALLComponents) |
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-@@ -473,20 +475,20 @@ SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/bin") |
162 |
- |
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- ## These variables are used in all install-targets |
164 |
- IF (NOT APPLE) |
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-- SET(BALL_RUNTIME_INSTALL_DIRECTORY "bin") |
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-- SET(BALL_LIBRARY_INSTALL_DIRECTORY "lib") |
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-- SET(BALL_ARCHIVE_INSTALL_DIRECTORY "lib") |
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-- SET(BALL_HEADER_INSTALL_DIRECTORY ".") |
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-- SET(BALL_DATA_INSTALL_DIRECTORY "share/BALL") |
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-- SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY "share/BALL/doc") |
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-- SET(BALL_TOOLS_INSTALL_DIRECTORY "bin/BALLTools") |
172 |
-+ SET(BALL_RUNTIME_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}) |
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-+ SET(BALL_LIBRARY_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) |
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-+ SET(BALL_ARCHIVE_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) |
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-+ SET(BALL_HEADER_INSTALL_DIRECTORY ${CMAKE_INSTALL_INCLUDEDIR}) |
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-+ SET(BALL_DATA_INSTALL_DIRECTORY ${CMAKE_INSTALL_DATAROOTDIR}/BALL) |
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-+ SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY ${CMAKE_INSTALL_DOCDIR}) |
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-+ SET(BALL_TOOLS_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}/BALLTools) |
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- |
180 |
- IF(WIN32) |
181 |
- SET(BALL_PYTHON_INSTALL_DIRECTORY "bin") |
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- SET(BALL_PLUGIN_INSTALL_DIRECTORY "bin") |
183 |
- ELSE() |
184 |
-- SET(BALL_PYTHON_INSTALL_DIRECTORY "lib") |
185 |
-- SET(BALL_PLUGIN_INSTALL_DIRECTORY "lib") |
186 |
-+ SET(BALL_PYTHON_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) |
187 |
-+ SET(BALL_PLUGIN_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) |
188 |
- ENDIF() |
189 |
- ENDIF() |
190 |
- |
191 |
-@@ -710,21 +712,21 @@ IF(NOT APPLE) |
192 |
- ## care of data files and headers |
193 |
- IF (NOT "${CMAKE_INSTALL_PREFIX}" STREQUAL ".") |
194 |
- ### Install the data directories |
195 |
-- INSTALL(DIRECTORY data DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL}) |
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-+ INSTALL(DIRECTORY data/ DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL}) |
197 |
- |
198 |
- ### Install the includes |
199 |
-- INSTALL(DIRECTORY include DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV}) |
200 |
-+ INSTALL(DIRECTORY include/ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV}) |
201 |
- ENDIF() |
202 |
- |
203 |
- ## The configured files have to be copied in any case |
204 |
- INSTALL(FILES ${PROJECT_BINARY_DIR}/include/BALL/CONFIG/config.h |
205 |
-- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/include/BALL/CONFIG" |
206 |
-+ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/CONFIG" |
207 |
- COMPONENT ${COMPONENT_LIBBALL_DEV} |
208 |
- ) |
209 |
- |
210 |
- INSTALL(FILES |
211 |
- ${PROJECT_BINARY_DIR}/include/BALL/PYTHON/BALLPythonConfig.h |
212 |
-- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/include/BALL/PYTHON" |
213 |
-+ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/PYTHON" |
214 |
- COMPONENT ${COMPONENT_LIBBALL_DEV} |
215 |
- ) |
216 |
- |
217 |
-@@ -866,7 +868,7 @@ EXPORT(PACKAGE BALL) |
218 |
- # Generate CMake package configuration for BALL installation |
219 |
- IF(NOT APPLE) |
220 |
- # Installation path for BALL CMake package configuration files |
221 |
-- SET(BALL_CMAKE_EXPORT_PATH "lib/cmake/BALL" CACHE PATH "Path to the cmake package configuration files") |
222 |
-+ SET(BALL_CMAKE_EXPORT_PATH ${CMAKE_INSTALL_LIBDIR}/cmake/BALL CACHE PATH "Path to the cmake package configuration files") |
223 |
- |
224 |
- LIST(REMOVE_ITEM BALL_INCLUDE_DIRS "${PROJECT_BINARY_DIR}/include") |
225 |
- LIST(REMOVE_ITEM BALL_INCLUDE_DIRS "${PROJECT_SOURCE_DIR}/include") |
226 |
--- |
227 |
-2.17.0 |
228 |
- |
229 |
- |
230 |
-From 17cbef40ad91cf051ca83b1ccf53dd2ccb22fc8d Mon Sep 17 00:00:00 2001 |
231 |
-From: Andreas Sturmlechner <andreas.sturmlechner@×××××.com> |
232 |
-Date: Sat, 21 Apr 2018 21:20:01 +0200 |
233 |
-Subject: [PATCH 2/3] Drop superfluous cmake variables |
234 |
- |
235 |
---- |
236 |
- CMakeLists.txt | 34 +++++++------------ |
237 |
- cmake/BALLDoc.cmake | 6 ++-- |
238 |
- source/APPLICATIONS/BALLVIEW/CMakeLists.txt | 4 +-- |
239 |
- source/EXTENSIONS/BALLAXY/CMakeLists.txt | 2 +- |
240 |
- source/EXTENSIONS/JUPYTER/CMakeLists.txt | 2 +- |
241 |
- source/EXTENSIONS/PRESENTABALL/CMakeLists.txt | 2 +- |
242 |
- source/PYTHON/EXTENSIONS/CMakeLists.txt | 12 +++---- |
243 |
- 7 files changed, 27 insertions(+), 35 deletions(-) |
244 |
- |
245 |
-diff --git a/CMakeLists.txt b/CMakeLists.txt |
246 |
-index 1a54446fb..9b9f3513b 100644 |
247 |
---- a/CMakeLists.txt |
248 |
-+++ b/CMakeLists.txt |
249 |
-@@ -475,14 +475,6 @@ SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${PROJECT_BINARY_DIR}/bin") |
250 |
- |
251 |
- ## These variables are used in all install-targets |
252 |
- IF (NOT APPLE) |
253 |
-- SET(BALL_RUNTIME_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}) |
254 |
-- SET(BALL_LIBRARY_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) |
255 |
-- SET(BALL_ARCHIVE_INSTALL_DIRECTORY ${CMAKE_INSTALL_LIBDIR}) |
256 |
-- SET(BALL_HEADER_INSTALL_DIRECTORY ${CMAKE_INSTALL_INCLUDEDIR}) |
257 |
-- SET(BALL_DATA_INSTALL_DIRECTORY ${CMAKE_INSTALL_DATAROOTDIR}/BALL) |
258 |
-- SET(BALL_DOCUMENTATION_INSTALL_DIRECTORY ${CMAKE_INSTALL_DOCDIR}) |
259 |
-- SET(BALL_TOOLS_INSTALL_DIRECTORY ${CMAKE_INSTALL_BINDIR}/BALLTools) |
260 |
-- |
261 |
- IF(WIN32) |
262 |
- SET(BALL_PYTHON_INSTALL_DIRECTORY "bin") |
263 |
- SET(BALL_PLUGIN_INSTALL_DIRECTORY "bin") |
264 |
-@@ -693,18 +685,18 @@ IF(NOT APPLE) |
265 |
- INSTALL(TARGETS BALL |
266 |
- EXPORT BALLExportGroup |
267 |
- COMPONENT "${COMPONENT_LIBBALL}" |
268 |
-- RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" |
269 |
-- LIBRARY DESTINATION "${BALL_LIBRARY_INSTALL_DIRECTORY}" |
270 |
-- ARCHIVE DESTINATION "${BALL_ARCHIVE_INSTALL_DIRECTORY}" |
271 |
-+ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" |
272 |
-+ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}" |
273 |
-+ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}" |
274 |
- ) |
275 |
- |
276 |
- IF(BALL_HAS_VIEW) |
277 |
- INSTALL(TARGETS VIEW |
278 |
- EXPORT BALLExportGroup |
279 |
- COMPONENT "${COMPONENT_LIBVIEW}" |
280 |
-- RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" |
281 |
-- LIBRARY DESTINATION "${BALL_LIBRARY_INSTALL_DIRECTORY}" |
282 |
-- ARCHIVE DESTINATION "${BALL_ARCHIVE_INSTALL_DIRECTORY}" |
283 |
-+ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" |
284 |
-+ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}" |
285 |
-+ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}" |
286 |
- ) |
287 |
- ENDIF() |
288 |
- |
289 |
-@@ -712,21 +704,21 @@ IF(NOT APPLE) |
290 |
- ## care of data files and headers |
291 |
- IF (NOT "${CMAKE_INSTALL_PREFIX}" STREQUAL ".") |
292 |
- ### Install the data directories |
293 |
-- INSTALL(DIRECTORY data/ DESTINATION "${BALL_DATA_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL}) |
294 |
-+ INSTALL(DIRECTORY data/ DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/BALL COMPONENT ${COMPONENT_LIBBALL}) |
295 |
- |
296 |
- ### Install the includes |
297 |
-- INSTALL(DIRECTORY include/ DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}" COMPONENT ${COMPONENT_LIBBALL_DEV}) |
298 |
-+ INSTALL(DIRECTORY include/ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}" COMPONENT ${COMPONENT_LIBBALL_DEV}) |
299 |
- ENDIF() |
300 |
- |
301 |
- ## The configured files have to be copied in any case |
302 |
- INSTALL(FILES ${PROJECT_BINARY_DIR}/include/BALL/CONFIG/config.h |
303 |
-- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/CONFIG" |
304 |
-+ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/BALL/CONFIG" |
305 |
- COMPONENT ${COMPONENT_LIBBALL_DEV} |
306 |
- ) |
307 |
- |
308 |
- INSTALL(FILES |
309 |
- ${PROJECT_BINARY_DIR}/include/BALL/PYTHON/BALLPythonConfig.h |
310 |
-- DESTINATION "${BALL_HEADER_INSTALL_DIRECTORY}/BALL/PYTHON" |
311 |
-+ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/BALL/PYTHON" |
312 |
- COMPONENT ${COMPONENT_LIBBALL_DEV} |
313 |
- ) |
314 |
- |
315 |
-@@ -744,14 +736,14 @@ IF(NOT APPLE) |
316 |
- FOREACH(LIB ${BALL_DEP_OPT_DLLS}) |
317 |
- STRING(TOLOWER "${LIB}" LOWER_LIB) |
318 |
- INSTALL(FILES "${LIB}" |
319 |
-- DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" |
320 |
-+ DESTINATION "${CMAKE_INSTALL_BINDIR}" |
321 |
- COMPONENT ${COMPONENT_LIBBALL}) |
322 |
- ENDFOREACH() |
323 |
- |
324 |
- IF(QT_DEPLOY_EXECUTABLE) |
325 |
- INSTALL(CODE |
326 |
-- "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/BALL.dll) |
327 |
-- EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/VIEW.dll)" |
328 |
-+ "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/BALL.dll) |
329 |
-+ EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/VIEW.dll)" |
330 |
- COMPONENT "${COMPONENT_LIBBALL}") |
331 |
- ENDIF() |
332 |
- ENDIF() |
333 |
-diff --git a/cmake/BALLDoc.cmake b/cmake/BALLDoc.cmake |
334 |
-index 061b9c95f..2d7c17466 100644 |
335 |
---- a/cmake/BALLDoc.cmake |
336 |
-+++ b/cmake/BALLDoc.cmake |
337 |
-@@ -20,7 +20,7 @@ ENDIF() |
338 |
- |
339 |
- IF(NOT APPLE) |
340 |
- INSTALL(DIRECTORY "${PROJECT_SOURCE_DIR}/doc/examples/" |
341 |
-- DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/EXAMPLES" |
342 |
-+ DESTINATION "${CMAKE_INSTALL_DOCDIR}/EXAMPLES" |
343 |
- COMPONENT "${COMPONENT_DOCUMENTATION_EXAMPLES}") |
344 |
- ENDIF() |
345 |
- |
346 |
-@@ -53,7 +53,7 @@ IF (DOXYGEN_FOUND) |
347 |
- |
348 |
- IF(NOT APPLE) |
349 |
- INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/doc/html/" |
350 |
-- DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/BALL" |
351 |
-+ DESTINATION "${CMAKE_INSTALL_DOCDIR}/BALL" |
352 |
- COMPONENT "${COMPONENT_DOCUMENTATION_HTML}" |
353 |
- ) |
354 |
- ENDIF() |
355 |
-@@ -107,7 +107,7 @@ IF (LATEX_COMPILER AND DVIPS_CONVERTER) |
356 |
- |
357 |
- IF(NOT APPLE) |
358 |
- INSTALL(FILES ${PROJECT_BINARY_DIR}/doc/tutorial.pdf |
359 |
-- DESTINATION "${BALL_DOCUMENTATION_INSTALL_DIRECTORY}/TUTORIAL" |
360 |
-+ DESTINATION "${CMAKE_INSTALL_DOCDIR}/TUTORIAL" |
361 |
- COMPONENT "${COMPONENT_DOCUMENTATION_PDF}" |
362 |
- OPTIONAL |
363 |
- ) |
364 |
-diff --git a/source/APPLICATIONS/BALLVIEW/CMakeLists.txt b/source/APPLICATIONS/BALLVIEW/CMakeLists.txt |
365 |
-index b4b96c31c..5fd21ee68 100644 |
366 |
---- a/source/APPLICATIONS/BALLVIEW/CMakeLists.txt |
367 |
-+++ b/source/APPLICATIONS/BALLVIEW/CMakeLists.txt |
368 |
-@@ -59,13 +59,13 @@ IF(APPLE) |
369 |
- ELSE() |
370 |
- INSTALL(TARGETS BALLView |
371 |
- COMPONENT "${COMPONENT_BALLVIEW}" |
372 |
-- RUNTIME DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" |
373 |
-+ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" |
374 |
- BUNDLE DESTINATION "${BALL_BUNDLE_INSTALL_DIRECTORY}" |
375 |
- ) |
376 |
- |
377 |
- IF(WIN32) |
378 |
- IF(QT_DEPLOY_EXECUTABLE) |
379 |
-- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/BALLView.exe)" |
380 |
-+ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/BALLView.exe)" |
381 |
- COMPONENT "${COMPONENT_BALLVIEW}") |
382 |
- ENDIF() |
383 |
- ENDIF() |
384 |
-diff --git a/source/EXTENSIONS/BALLAXY/CMakeLists.txt b/source/EXTENSIONS/BALLAXY/CMakeLists.txt |
385 |
-index 2fdfcbeed..1eed12c37 100644 |
386 |
---- a/source/EXTENSIONS/BALLAXY/CMakeLists.txt |
387 |
-+++ b/source/EXTENSIONS/BALLAXY/CMakeLists.txt |
388 |
-@@ -66,7 +66,7 @@ IF(NOT APPLE) |
389 |
- |
390 |
- IF(WIN32) |
391 |
- IF(QT_DEPLOY_EXECUTABLE) |
392 |
-- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginBALLaxy.dll)" |
393 |
-+ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginBALLaxy.dll)" |
394 |
- COMPONENT "Unspecified") |
395 |
- ENDIF() |
396 |
- ENDIF() |
397 |
-diff --git a/source/EXTENSIONS/JUPYTER/CMakeLists.txt b/source/EXTENSIONS/JUPYTER/CMakeLists.txt |
398 |
-index bb7e91921..24a459fbf 100644 |
399 |
---- a/source/EXTENSIONS/JUPYTER/CMakeLists.txt |
400 |
-+++ b/source/EXTENSIONS/JUPYTER/CMakeLists.txt |
401 |
-@@ -78,7 +78,7 @@ IF(NOT APPLE) |
402 |
- |
403 |
- IF(WIN32) |
404 |
- IF(QT_DEPLOY_EXECUTABLE) |
405 |
-- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginJupyter.dll)" |
406 |
-+ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginJupyter.dll)" |
407 |
- COMPONENT "Unspecified") |
408 |
- ENDIF() |
409 |
- ENDIF() |
410 |
-diff --git a/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt b/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt |
411 |
-index 8606f2f26..ad027fd03 100644 |
412 |
---- a/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt |
413 |
-+++ b/source/EXTENSIONS/PRESENTABALL/CMakeLists.txt |
414 |
-@@ -66,7 +66,7 @@ IF(NOT APPLE) |
415 |
- |
416 |
- IF(WIN32) |
417 |
- IF(QT_DEPLOY_EXECUTABLE) |
418 |
-- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${BALL_RUNTIME_INSTALL_DIRECTORY}/pluginPresentaBALL.dll)" |
419 |
-+ INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${QT_DEPLOY_EXECUTABLE} \$\{CMAKE_INSTALL_PREFIX\}/${CMAKE_INSTALL_BINDIR}/pluginPresentaBALL.dll)" |
420 |
- COMPONENT "Unspecified") |
421 |
- ENDIF() |
422 |
- ENDIF() |
423 |
-diff --git a/source/PYTHON/EXTENSIONS/CMakeLists.txt b/source/PYTHON/EXTENSIONS/CMakeLists.txt |
424 |
-index 590e1de3a..374732519 100644 |
425 |
---- a/source/PYTHON/EXTENSIONS/CMakeLists.txt |
426 |
-+++ b/source/PYTHON/EXTENSIONS/CMakeLists.txt |
427 |
-@@ -49,15 +49,15 @@ IF(BALL_PYTHON_SUPPORT) |
428 |
- IF(NOT APPLE) |
429 |
- INSTALL(TARGETS BALLCoremodule |
430 |
- COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}" |
431 |
-- RUNTIME DESTINATION ${BALL_RUNTIME_INSTALL_DIRECTORY} |
432 |
-- LIBRARY DESTINATION ${BALL_LIBRARY_INSTALL_DIRECTORY} |
433 |
-+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} |
434 |
-+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} |
435 |
- ) |
436 |
- |
437 |
- IF(BALL_HAS_VIEW) |
438 |
- INSTALL(TARGETS VIEWmodule |
439 |
- COMPONENT "${COMPONENT_PYTHON_BINDINGS_VIEW}" |
440 |
-- RUNTIME DESTINATION ${BALL_RUNTIME_INSTALL_DIRECTORY} |
441 |
-- LIBRARY DESTINATION ${BALL_LIBRARY_INSTALL_DIRECTORY} |
442 |
-+ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} |
443 |
-+ LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} |
444 |
- ) |
445 |
- ENDIF() |
446 |
- |
447 |
-@@ -69,7 +69,7 @@ IF(BALL_PYTHON_SUPPORT) |
448 |
- IF (WIN32) |
449 |
- # INSTALL(FILES ${PYTHON_EXECUTABLE} |
450 |
- # COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}" |
451 |
-- # DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" |
452 |
-+ # DESTINATION "${CMAKE_INSTALL_BINDIR}" |
453 |
- #) |
454 |
- |
455 |
- |
456 |
-@@ -78,7 +78,7 @@ IF(BALL_PYTHON_SUPPORT) |
457 |
- |
458 |
- INSTALL(DIRECTORY "${PYTHON_SITE_PACKAGES_DIR}" |
459 |
- COMPONENT "${COMPONENT_PYTHON_BINDINGS_BALL}" |
460 |
-- DESTINATION "${BALL_RUNTIME_INSTALL_DIRECTORY}" |
461 |
-+ DESTINATION "${CMAKE_INSTALL_BINDIR}" |
462 |
- ) |
463 |
- ENDIF () |
464 |
- ENDIF() |
465 |
--- |
466 |
-2.17.0 |
467 |
- |
468 |
- |
469 |
-From 666ca19b00b14752e69c05600725724fb4f6d488 Mon Sep 17 00:00:00 2001 |
470 |
-From: Andreas Sturmlechner <andreas.sturmlechner@×××××.com> |
471 |
-Date: Sat, 21 Apr 2018 22:02:14 +0200 |
472 |
-Subject: [PATCH 3/3] Install html doc into "html" dir |
473 |
- |
474 |
---- |
475 |
- cmake/BALLDoc.cmake | 2 +- |
476 |
- 1 file changed, 1 insertion(+), 1 deletion(-) |
477 |
- |
478 |
-diff --git a/cmake/BALLDoc.cmake b/cmake/BALLDoc.cmake |
479 |
-index 2d7c17466..a070613c8 100644 |
480 |
---- a/cmake/BALLDoc.cmake |
481 |
-+++ b/cmake/BALLDoc.cmake |
482 |
-@@ -53,7 +53,7 @@ IF (DOXYGEN_FOUND) |
483 |
- |
484 |
- IF(NOT APPLE) |
485 |
- INSTALL(DIRECTORY "${PROJECT_BINARY_DIR}/doc/html/" |
486 |
-- DESTINATION "${CMAKE_INSTALL_DOCDIR}/BALL" |
487 |
-+ DESTINATION "${CMAKE_INSTALL_DOCDIR}/html" |
488 |
- COMPONENT "${COMPONENT_DOCUMENTATION_HTML}" |
489 |
- ) |
490 |
- ENDIF() |
491 |
--- |
492 |
-2.17.0 |
493 |
- |
494 |
|
495 |
diff --git a/sci-chemistry/ball/metadata.xml b/sci-chemistry/ball/metadata.xml |
496 |
deleted file mode 100644 |
497 |
index 6f18011f2e0..00000000000 |
498 |
--- a/sci-chemistry/ball/metadata.xml |
499 |
+++ /dev/null |
500 |
@@ -1,36 +0,0 @@ |
501 |
-<?xml version="1.0" encoding="UTF-8"?> |
502 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
503 |
-<pkgmetadata> |
504 |
- <maintainer type="project"> |
505 |
- <email>sci-chemistry@g.o</email> |
506 |
- <name>Gentoo Chemistry Project</name> |
507 |
- </maintainer> |
508 |
- <longdescription> |
509 |
-Rapid Software Prototyping can significantly reduce development times in the |
510 |
-field of Computational Molecular Biology and Molecular Modeling. |
511 |
-BALL (Biochemical Algorithms Library) is an application framework in C++ that |
512 |
-has been specifically designed for this purpose. It provides an extensive set |
513 |
-of data structures as well as classes for Molecular Mechanics, advanced |
514 |
-solvation methods, comparison and analysis of protein structures, file |
515 |
-import/export, and visualization . |
516 |
- |
517 |
-BALL has been carefully designed to be robust, easy to use, and open to |
518 |
-extensions. Especially its extensibility which results from an object-oriented |
519 |
-and generic programming approach distinguishes it from other software packages. |
520 |
-BALL is well suited to serve as a public repository for reliable data |
521 |
-structures and algorithms. |
522 |
- |
523 |
-Based on BALL we have developed a stand-alone tool for molecular visualization, |
524 |
-BALLView . BALLView makes the broad functionality available through an |
525 |
-integrated user-friendly GUI. |
526 |
- </longdescription> |
527 |
- <use> |
528 |
- <flag name="cuda">Include cuda support</flag> |
529 |
- <flag name="fftw">Build with <pkg>sci-libs/fftw</pkg> (switching BALL to GPL3)</flag> |
530 |
- <flag name="gui">Build VIEW library required for visualization and graphical user interfaces</flag> |
531 |
- <flag name="lpsolve">Enable support for the Mixed Integer Linear Programming solver</flag> |
532 |
- <flag name="openbabel">Enable support for <pkg>sci-chemistry/openbabel</pkg> (switching BALL to GPL3)</flag> |
533 |
- <flag name="svm">Enable support for the Support Vector Machine module</flag> |
534 |
- <flag name="webengine">Enable QtWebEngine support with Qt5 (requires gui)</flag> |
535 |
- </use> |
536 |
-</pkgmetadata> |