[gentoo-commits] gentoo-x86 commit in sci-biology/velvet: metadata.xml ChangeLog velvet-0.7.31.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/06/05 10:06:43

  Added:                metadata.xml ChangeLog velvet-0.7.31.ebuild
  Log:
  New package, ebuild written by me
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-biology/velvet/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<maintainer>
		<email>weaver@g.o</email>
		<name>Andrey Kislyuk</name>
	</maintainer>
	<herd>sci-biology</herd>
</pkgmetadata>



1.1                  sci-biology/velvet/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/velvet
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.1 2009/06/05 10:06:43 weaver Exp $

*velvet-0.7.31 (05 Jun 2009)

  05 Jun 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml,
  +velvet-0.7.31.ebuild:
  New package, ebuild written by me




1.1                  sci-biology/velvet/velvet-0.7.31.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.31.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.31.ebuild?rev=1.1&content-type=text/plain

Index: velvet-0.7.31.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.31.ebuild,v 1.1 2009/06/05 10:06:43 weaver Exp $

EAPI="2"

MY_P="${PN}_${PV}"

DESCRIPTION="A sequence assembler for very short reads"
HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"

LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"

DEPEND=""
RDEPEND="${DEPEND}"

S="${WORKDIR}/${MY_P}"

src_prepare() {
	rm -rf "${S}"/third-party/zlib*
	sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \
		-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \
		-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \
		"${S}"/Makefile || die
	sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die
}

src_compile() {
	emake -j1 || die
	emake -j1 color || die
}

src_install() {
	dobin velvet{g,h,g_de,h_de} third-party/layout/graph2.py third-party/afg_handling/*.pl || die
	dodoc Manual.pdf CREDITS.txt
}