[gentoo-commits] proj/sci:master commit in: sci-biology/tablet/, sci-biology/tablet/files/

[Andrew Ammerlaan]

commit:     5d9e94b7d6dcf17e0158e3619e3921b9354dd702
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Feb  1 05:05:49 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Feb  1 05:06:50 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5d9e94b7

sci-biology/tablet: drop pack, py2 only

the py code is still py2 style

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/tablet/files/response.varfile   | 11 -----
 sci-biology/tablet/metadata.xml             | 12 ------
 sci-biology/tablet/tablet-1.17.08.17.ebuild | 63 -----------------------------
 sci-biology/tablet/tablet-9999.ebuild       | 61 ----------------------------
 4 files changed, 147 deletions(-)

diff --git a/sci-biology/tablet/files/response.varfile b/sci-biology/tablet/files/response.varfile
deleted file mode 100644
index cfa2e6808..000000000
--- a/sci-biology/tablet/files/response.varfile
+++ /dev/null
@@ -1,11 +0,0 @@
-#install4j response file for Tablet x.xx.xx.xx
-#Mon Jan 24 11:35:29 GMT 2011
-executeLauncherAction$Boolean=false
-sys.programGroupDisabled$Boolean=true
-# somehow, this happens: ln -s /scratch/var/tmp/portage/sci-biology/tablet-bin-1.11.02.18/image/opt/Tablet/tablet /usr/local/bin/tablet
-# # that happens because /scratch/var/tmp/portage/sci-biology/tablet-bin-1.11.02.18/image/opt/Tablet/.install4j/response.varfile does not reflect our values
-sys.symlinkDir="${D}"usr/bin
-#sys.symlinkDir=/scratch/var/tmp/portage/sci-biology/tablet-bin-1.11.02.18/image/usr/bin
-sys.languageId=en
-sys.userHome="${D}"/../temp
-sys.installationDir="${D}"opt/Tablet

diff --git a/sci-biology/tablet/metadata.xml b/sci-biology/tablet/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/tablet/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/tablet/tablet-1.17.08.17.ebuild b/sci-biology/tablet/tablet-1.17.08.17.ebuild
deleted file mode 100644
index 158caba78..000000000
--- a/sci-biology/tablet/tablet-1.17.08.17.ebuild
+++ /dev/null
@@ -1,63 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit java-pkg-2 java-ant-2 python-r1
-
-[ "$PV" == "9999" ] && inherit git-r3
-
-DESCRIPTION="Viewer of next generation sequence assemblies and alignments"
-HOMEPAGE="https://ics.hutton.ac.uk/tablet"
-if [ "$PV" == "9999" ]; then
-	EGIT_REPO_URI="https://github.com/cropgeeks/tablet.git"
-	KEYWORDS=""
-else
-	SRC_URI="https://github.com/cropgeeks/tablet/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS="" # lacks lib/htsjdk-2.0.11.jar
-fi
-
-LICENSE="BSD-2"
-SLOT="0"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
-	>=virtual/jdk-1.8:*"
-RDEPEND="${PYTHON_DEPS}
-	>=virtual/jre-1.8:*
-	>=dev-java/commons-compress-1.4.1
-	dev-java/htsjdk"
-# contains bundled sqlite-jdbc-3.8.6.jar, samtools-linux64.jar
-# sqlite-jdbc-3.8.6.jar is not dev-db/sqlite:3
-# samtools-linux64.jar is not sci-biology/samtools but 0.1.12a (r862)
-# needs htsjdk-2.0.11.jar
-
-src_compile(){
-	mkdir -p classes || die
-	ant jar || die
-}
-
-src_install() {
-	java-pkg_dojar lib/tablet.jar
-	java-pkg_dolauncher ${PN}
-	java-pkg_dojar lib/tablet-resources.jar
-	java-pkg_dojar lib/flamingo.jar
-	java-pkg_dojar lib/scri-commons.jar
-	java-pkg_dojar lib/samtools-all.jar
-	if [ "${ABI}" == "amd64" ]; then
-		java-pkg_dojar lib/samtools-linux64.jar
-	fi
-	if [ "${ABI}" == "x86" ]; then
-		java-pkg_dojar lib/samtools-linux32.jar
-	fi
-	# is the tar.gz tarball missing by mistake lib/htsjdk*.jar ?
-	# java-pkg_dojar lib/htsjdk*.jar # is htsjdk-2.11.0 in tablet-1.17.08.17
-	java-pkg_dojar lib/sqlite-jdbc*.jar
-
-	echo "PATH=${EPREFIX}/opt/Tablet" > 99Tablet
-	doenvd 99Tablet
-}

diff --git a/sci-biology/tablet/tablet-9999.ebuild b/sci-biology/tablet/tablet-9999.ebuild
deleted file mode 100644
index e9ae6890d..000000000
--- a/sci-biology/tablet/tablet-9999.ebuild
+++ /dev/null
@@ -1,61 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit java-pkg-2 java-ant-2 python-r1
-
-[ "$PV" == "9999" ] && inherit git-r3
-
-DESCRIPTION="Viewer of next generation sequence assemblies and alignments"
-HOMEPAGE="https://ics.hutton.ac.uk/tablet"
-if [ "$PV" == "9999" ]; then
-	EGIT_REPO_URI="https://github.com/cropgeeks/tablet.git"
-	KEYWORDS=""
-else
-	SRC_URI="https://github.com/cropgeeks/tablet/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS=""
-fi
-
-LICENSE="BSD-2"
-SLOT="0"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
-	>=virtual/jdk-1.8:*"
-RDEPEND="${PYTHON_DEPS}
-	>=virtual/jre-1.8:*
-	>=dev-java/commons-compress-1.4.1"
-# contains bundled sqlite-jdbc-3.8.6.jar, samtools-linux64.jar, htsjdk-2.11.0.jar
-# sqlite-jdbc-3.8.6.jar is not dev-db/sqlite:3
-# samtools-linux64.jar is not sci-biology/samtools but 0.1.12a (r862)
-
-#S="${WORKDIR}"
-src_compile(){
-	mkdir -p classes || die
-	ant jar || die
-}
-
-src_install() {
-	java-pkg_dojar lib/tablet.jar
-	java-pkg_dolauncher ${PN}
-	java-pkg_dojar lib/tablet-resources.jar
-	java-pkg_dojar lib/flamingo.jar
-	java-pkg_dojar lib/scri-commons.jar
-	java-pkg_dojar lib/samtools-all.jar
-	if [ "${ABI}" == "amd64" ]; then
-		java-pkg_dojar lib/samtools-linux64.jar
-	fi
-	if [ "${ABI}" == "x86" ]; then
-		java-pkg_dojar lib/samtools-linux32.jar
-	fi
-	java-pkg_dojar lib/htsjdk*.jar # is htsjdk-2.11.0 in tablet-1.17.08.17
-	java-pkg_dojar lib/sqlite-jdbc*.jar
-
-	echo "PATH=${EPREFIX}/usr/share/${PN}" > 99Tablet
-	doenvd 99Tablet
-}