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commit: 101952a9d415206f8f45d06e6f51f277fdf38621 |
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Author: Martin Mokrejš <mmokrejs <AT> gmail <DOT> com> |
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AuthorDate: Thu Aug 29 14:27:51 2013 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Thu Aug 29 14:27:51 2013 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=101952a9 |
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|
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pushing out a draft ebuild from manatee-jcvi |
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|
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--- |
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sci-biology/manatee-jcvi/ChangeLog | 11 +++++ |
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sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 53 ++++++++++++++++++++++ |
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sci-biology/manatee-jcvi/metadata.xml | 9 ++++ |
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3 files changed, 73 insertions(+) |
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|
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diff --git a/sci-biology/manatee-jcvi/ChangeLog b/sci-biology/manatee-jcvi/ChangeLog |
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new file mode 100644 |
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index 0000000..ab9e1df |
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--- /dev/null |
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+++ b/sci-biology/manatee-jcvi/ChangeLog |
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@@ -0,0 +1,11 @@ |
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+# ChangeLog for sci-biology/manatee-jcvi |
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+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: $ |
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+ |
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+*manatee-jcvi-2.4.3 (29 Aug 2013) |
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+ |
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+ 29 Aug 2013; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ +manatee-jcvi-2.4.3.ebuild, +metadata.xml: |
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+ Initial ebuild for the other version of manatee, using different database |
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+ schema. |
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+ |
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|
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diff --git a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild |
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new file mode 100644 |
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index 0000000..abc3874 |
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--- /dev/null |
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+++ b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild |
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@@ -0,0 +1,53 @@ |
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+# Copyright 1999-2013 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=3 |
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+ |
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+DESCRIPTION="A JCVI version of Manatee: a genome annotation tool that can view, modify, and store annotation for prokaryotic and eukaryotic genomes." |
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+HOMEPAGE="http://manatee.sourceforge.net/jcvi/downloads.shtml" |
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+SRC_URI="http://downloads.sourceforge.net/project/manatee/manatee/manatee-2.4.3/manatee-2.4.3.tgz" |
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+ |
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+LICENSE="Artistic-Manatee" |
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+SLOT="0" |
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+KEYWORDS="" |
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+#KEYWORDS="~amd64 ~x86" |
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+IUSE="" |
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+ |
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+DEPEND=">=dev-libs/expat-1.95.8 |
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+ >=media-libs/gd-2.0.34 |
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+ dev-perl/CGI |
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+ dev-perl/CGI-Carp |
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+ dev-perl/CGI-Cookie |
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+ dev-perl/DBI |
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+ dev-perl/DBD-mysql |
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+ dev-perl/XML-Parser |
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+ dev-perl/XML-Twig |
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+ dev-perl/XML-Simple |
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+ dev-perl/XML-Writer |
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+ dev-perl/HTML-Template |
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+ dev-perl/Tree-DAG_Node |
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+ dev-perl/File-Spec |
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+ dev-perl/Data-Dumper |
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+ dev-perl/GD |
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+ dev-perl/GD-Text |
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+ dev-perl/GD-Graph |
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+ dev-perl/Storable |
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+ dev-perl/Log-Log4perl |
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+ dev-perl/Log-Cabin |
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+ dev-perl/Date-Manip |
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+ dev-perl/IO-Tee |
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+ dev-perl/MLDBM" |
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+RDEPEND="${DEPEND} |
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+ >=dev-db/mysql-5.0 |
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+ >=www-servers/apache-2.2" |
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+ |
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+S="${WORKDIR}"/manatee-"${PV}" |
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+ |
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+src_configure(){ |
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+ econf HTTPD=/usr/sbin/httpd HTTPD_SCRIPT_HOME=/var/www/cgi-bin HTTPD_DOC_HOME=/var/www/htdocs MYSQLD=/usr/sbin/mysqld || die |
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+} |
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+ |
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+src_compile(){ |
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+ emake || die |
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+} |
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|
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diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml |
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new file mode 100644 |
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index 0000000..07b5255 |
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--- /dev/null |
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+++ b/sci-biology/manatee-jcvi/metadata.xml |
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@@ -0,0 +1,9 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <herd>sci-biology</herd> |
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+ <maintainer> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+</pkgmetadata> |