Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/manatee-jcvi/
Date: Thu, 29 Aug 2013 14:28:37
Message-Id: 1377786471.101952a9d415206f8f45d06e6f51f277fdf38621.mmokrejs@gentoo
1 commit: 101952a9d415206f8f45d06e6f51f277fdf38621
2 Author: Martin Mokrejš <mmokrejs <AT> gmail <DOT> com>
3 AuthorDate: Thu Aug 29 14:27:51 2013 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Thu Aug 29 14:27:51 2013 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=101952a9
7
8 pushing out a draft ebuild from manatee-jcvi
9
10 ---
11 sci-biology/manatee-jcvi/ChangeLog | 11 +++++
12 sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 53 ++++++++++++++++++++++
13 sci-biology/manatee-jcvi/metadata.xml | 9 ++++
14 3 files changed, 73 insertions(+)
15
16 diff --git a/sci-biology/manatee-jcvi/ChangeLog b/sci-biology/manatee-jcvi/ChangeLog
17 new file mode 100644
18 index 0000000..ab9e1df
19 --- /dev/null
20 +++ b/sci-biology/manatee-jcvi/ChangeLog
21 @@ -0,0 +1,11 @@
22 +# ChangeLog for sci-biology/manatee-jcvi
23 +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
24 +# $Header: $
25 +
26 +*manatee-jcvi-2.4.3 (29 Aug 2013)
27 +
28 + 29 Aug 2013; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
29 + +manatee-jcvi-2.4.3.ebuild, +metadata.xml:
30 + Initial ebuild for the other version of manatee, using different database
31 + schema.
32 +
33
34 diff --git a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild
35 new file mode 100644
36 index 0000000..abc3874
37 --- /dev/null
38 +++ b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild
39 @@ -0,0 +1,53 @@
40 +# Copyright 1999-2013 Gentoo Foundation
41 +# Distributed under the terms of the GNU General Public License v2
42 +# $Header: $
43 +
44 +EAPI=3
45 +
46 +DESCRIPTION="A JCVI version of Manatee: a genome annotation tool that can view, modify, and store annotation for prokaryotic and eukaryotic genomes."
47 +HOMEPAGE="http://manatee.sourceforge.net/jcvi/downloads.shtml"
48 +SRC_URI="http://downloads.sourceforge.net/project/manatee/manatee/manatee-2.4.3/manatee-2.4.3.tgz"
49 +
50 +LICENSE="Artistic-Manatee"
51 +SLOT="0"
52 +KEYWORDS=""
53 +#KEYWORDS="~amd64 ~x86"
54 +IUSE=""
55 +
56 +DEPEND=">=dev-libs/expat-1.95.8
57 + >=media-libs/gd-2.0.34
58 + dev-perl/CGI
59 + dev-perl/CGI-Carp
60 + dev-perl/CGI-Cookie
61 + dev-perl/DBI
62 + dev-perl/DBD-mysql
63 + dev-perl/XML-Parser
64 + dev-perl/XML-Twig
65 + dev-perl/XML-Simple
66 + dev-perl/XML-Writer
67 + dev-perl/HTML-Template
68 + dev-perl/Tree-DAG_Node
69 + dev-perl/File-Spec
70 + dev-perl/Data-Dumper
71 + dev-perl/GD
72 + dev-perl/GD-Text
73 + dev-perl/GD-Graph
74 + dev-perl/Storable
75 + dev-perl/Log-Log4perl
76 + dev-perl/Log-Cabin
77 + dev-perl/Date-Manip
78 + dev-perl/IO-Tee
79 + dev-perl/MLDBM"
80 +RDEPEND="${DEPEND}
81 + >=dev-db/mysql-5.0
82 + >=www-servers/apache-2.2"
83 +
84 +S="${WORKDIR}"/manatee-"${PV}"
85 +
86 +src_configure(){
87 + econf HTTPD=/usr/sbin/httpd HTTPD_SCRIPT_HOME=/var/www/cgi-bin HTTPD_DOC_HOME=/var/www/htdocs MYSQLD=/usr/sbin/mysqld || die
88 +}
89 +
90 +src_compile(){
91 + emake || die
92 +}
93
94 diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml
95 new file mode 100644
96 index 0000000..07b5255
97 --- /dev/null
98 +++ b/sci-biology/manatee-jcvi/metadata.xml
99 @@ -0,0 +1,9 @@
100 +<?xml version="1.0" encoding="UTF-8"?>
101 +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
102 +<pkgmetadata>
103 + <herd>sci-biology</herd>
104 + <maintainer>
105 + <email>mmokrejs@×××××××××××××××.cz</email>
106 + <name>Martin Mokrejs</name>
107 + </maintainer>
108 +</pkgmetadata>