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commit: dc7beed7f021c6afe109a71cd67a3cf014538a57 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Sat Feb 19 14:05:07 2022 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Sat Feb 19 14:05:12 2022 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dc7beed7 |
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|
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sci-biology/vcftools: add version 0.1.16 |
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|
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Closes: https://bugs.gentoo.org/833503 |
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Package-Manager: Portage-3.0.30, Repoman-3.0.3 |
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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sci-biology/vcftools/Manifest | 1 + |
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sci-biology/vcftools/vcftools-0.1.16.ebuild | 37 +++++++++++++++++++++++++++++ |
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2 files changed, 38 insertions(+) |
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|
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diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest |
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index d54587b1a971..411610b28376 100644 |
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--- a/sci-biology/vcftools/Manifest |
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+++ b/sci-biology/vcftools/Manifest |
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@@ -1 +1,2 @@ |
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DIST vcftools-0.1.14.tar.gz 342369 BLAKE2B 14be867c0be41767e2c97c8be212f3cff495c1cb6699294fb8a26ac491901599cd1e400cb80c6d609dce36584ee5defdb3b3652657bd127e0c67c5b29a842cc5 SHA512 863a16b3b20d392deba7f04310af95f1ab21be537273692aa104e22d737af2eb1bc54a768af954f06188e0500e4f7a032d1189886eb3a439b108cb8189b14eb7 |
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+DIST vcftools-0.1.16.tar.gz 480575 BLAKE2B 5c0bf67aef8ef4705f621485df4c556f6bace190311c308f0364f3e274cf4818f56f2186905fdfb7459dc4be9664a8b1ff631e2cecd03abd7aa82dcfc7e5aa64 SHA512 c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6 |
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|
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diff --git a/sci-biology/vcftools/vcftools-0.1.16.ebuild b/sci-biology/vcftools/vcftools-0.1.16.ebuild |
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new file mode 100644 |
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index 000000000000..b06a81dd0a1a |
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--- /dev/null |
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+++ b/sci-biology/vcftools/vcftools-0.1.16.ebuild |
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@@ -0,0 +1,37 @@ |
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+# Copyright 1999-2022 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=8 |
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+ |
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+inherit autotools flag-o-matic perl-functions toolchain-funcs |
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+ |
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+DESCRIPTION="Tools for working with VCF (Variant Call Format) files" |
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+HOMEPAGE="http://vcftools.sourceforge.net/" |
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+SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz" |
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+ |
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+LICENSE="LGPL-3" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="lapack" |
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+ |
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+RDEPEND="sys-libs/zlib |
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+ dev-lang/perl:= |
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+ lapack? ( virtual/lapack )" |
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+DEPEND="${RDEPEND}" |
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+BDEPEND="virtual/pkgconfig" |
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+ |
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+src_prepare() { |
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+ default |
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+ eautoreconf |
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+} |
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+ |
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+src_configure() { |
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+ perl_set_version |
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+ |
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+ append-flags $($(tc-getPKG_CONFIG) --cflags lapack) |
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+ append-libs $($(tc-getPKG_CONFIG) --libs lapack) |
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+ |
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+ econf \ |
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+ $(use_enable lapack pca) \ |
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+ --with-pmdir="${VENDOR_LIB#${EPREFIX}/usr}" |
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+} |