From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.5.9.ebuild |
Date: | Sun, 01 May 2011 09:20:03 |
Message-Id: | 20110501091952.38AC520054@flycatcher.gentoo.org |
1 | jlec 11/05/01 09:19:52 |
2 | |
3 | Modified: ChangeLog |
4 | Added: bwa-0.5.9.ebuild |
5 | Log: |
6 | Version BUmp, #354925 |
7 | |
8 | (Portage version: 2.2.0_alpha30/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.10 sci-biology/bwa/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.10&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.10&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.9&r2=1.10 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v |
20 | retrieving revision 1.9 |
21 | retrieving revision 1.10 |
22 | diff -u -r1.9 -r1.10 |
23 | --- ChangeLog 9 Oct 2010 20:15:55 -0000 1.9 |
24 | +++ ChangeLog 1 May 2011 09:19:52 -0000 1.10 |
25 | @@ -1,6 +1,11 @@ |
26 | # ChangeLog for sci-biology/bwa |
27 | -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.9 2010/10/09 20:15:55 weaver Exp $ |
29 | +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
30 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.10 2011/05/01 09:19:52 jlec Exp $ |
31 | + |
32 | +*bwa-0.5.9 (01 May 2011) |
33 | + |
34 | + 01 May 2011; Justin Lecher <jlec@g.o> +bwa-0.5.9.ebuild: |
35 | + Version BUmp, #354925 |
36 | |
37 | *bwa-0.5.8a (09 Oct 2010) |
38 | |
39 | |
40 | |
41 | |
42 | 1.1 sci-biology/bwa/bwa-0.5.9.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: bwa-0.5.9.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2011 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild,v 1.1 2011/05/01 09:19:52 jlec Exp $ |
52 | |
53 | EAPI=2 |
54 | |
55 | inherit flag-o-matic toolchain-funcs |
56 | |
57 | DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" |
58 | HOMEPAGE="http://bio-bwa.sourceforge.net/" |
59 | SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2" |
60 | |
61 | LICENSE="GPL-3" |
62 | SLOT="0" |
63 | IUSE="" |
64 | KEYWORDS="~amd64 ~x86 ~x64-macos" |
65 | |
66 | src_prepare() { |
67 | sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \ |
68 | -i "${S}"/Makefile || die #336348 |
69 | append-flags -pthread |
70 | } |
71 | |
72 | src_compile() { |
73 | emake -e CC="$(tc-getCC)" || die |
74 | } |
75 | |
76 | src_install() { |
77 | dobin bwa || die |
78 | doman bwa.1 || die |
79 | exeinto /usr/share/${PN} |
80 | doexe solid2fastq.pl || die |
81 | doexe qualfa2fq.pl || die |
82 | dodoc ChangeLog NEWS || die |
83 | } |