| 1 |
commit: 8b2c35ac92ac6644a09d897c1616ed3753396bff |
| 2 |
Author: Matthias Maier <tamiko <AT> gentoo <DOT> org> |
| 3 |
AuthorDate: Tue Jun 23 18:03:38 2015 +0000 |
| 4 |
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Tue Jun 23 18:03:38 2015 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b2c35ac |
| 7 |
|
| 8 |
sci-mathematics/petsc: Avoid a sandbox violation, bug #548498 |
| 9 |
|
| 10 |
Package-Manager: portage-2.2.18 |
| 11 |
|
| 12 |
sci-mathematics/petsc/ChangeLog | 4 ++++ |
| 13 |
sci-mathematics/petsc/petsc-3.5.3.ebuild | 7 +++++++ |
| 14 |
sci-mathematics/petsc/petsc-3.6.0.ebuild | 7 +++++++ |
| 15 |
3 files changed, 18 insertions(+) |
| 16 |
|
| 17 |
diff --git a/sci-mathematics/petsc/ChangeLog b/sci-mathematics/petsc/ChangeLog |
| 18 |
index 858b694..1f8dcbb 100644 |
| 19 |
--- a/sci-mathematics/petsc/ChangeLog |
| 20 |
+++ b/sci-mathematics/petsc/ChangeLog |
| 21 |
@@ -2,6 +2,10 @@ |
| 22 |
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
| 23 |
# $Header: $ |
| 24 |
|
| 25 |
+ 23 Jun 2015; Matthias Maier <tamiko@g.o> petsc-3.5.3.ebuild, |
| 26 |
+ petsc-3.6.0.ebuild: |
| 27 |
+ sci-mathematics/petsc: Avoid a sandbox violation, bug #548498 |
| 28 |
+ |
| 29 |
*petsc-3.6.0 (23 Jun 2015) |
| 30 |
|
| 31 |
23 Jun 2015; Matthias Maier <tamiko@g.o> |
| 32 |
|
| 33 |
diff --git a/sci-mathematics/petsc/petsc-3.5.3.ebuild b/sci-mathematics/petsc/petsc-3.5.3.ebuild |
| 34 |
index 09e5bfb..c7f0269 100644 |
| 35 |
--- a/sci-mathematics/petsc/petsc-3.5.3.ebuild |
| 36 |
+++ b/sci-mathematics/petsc/petsc-3.5.3.ebuild |
| 37 |
@@ -74,6 +74,13 @@ src_prepare() { |
| 38 |
} |
| 39 |
|
| 40 |
src_configure() { |
| 41 |
+ # bug 548498 |
| 42 |
+ # PETSc runs mpi processes during configure that result in a sandbox |
| 43 |
+ # violation by trying to open /proc/mtrr rw. This is not easy to |
| 44 |
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so, |
| 45 |
+ # which is used by libmpi.so. |
| 46 |
+ addpredict /proc/mtrr |
| 47 |
+ |
| 48 |
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options |
| 49 |
petsc_enable() { |
| 50 |
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" |
| 51 |
|
| 52 |
diff --git a/sci-mathematics/petsc/petsc-3.6.0.ebuild b/sci-mathematics/petsc/petsc-3.6.0.ebuild |
| 53 |
index 6c96de3..d7ee394 100644 |
| 54 |
--- a/sci-mathematics/petsc/petsc-3.6.0.ebuild |
| 55 |
+++ b/sci-mathematics/petsc/petsc-3.6.0.ebuild |
| 56 |
@@ -77,6 +77,13 @@ src_prepare() { |
| 57 |
} |
| 58 |
|
| 59 |
src_configure() { |
| 60 |
+ # bug 548498 |
| 61 |
+ # PETSc runs mpi processes during configure that result in a sandbox |
| 62 |
+ # violation by trying to open /proc/mtrr rw. This is not easy to |
| 63 |
+ # mitigate because it happens in libpciaccess.so called by libhwloc.so, |
| 64 |
+ # which is used by libmpi.so. |
| 65 |
+ addpredict /proc/mtrr |
| 66 |
+ |
| 67 |
# petsc uses --with-blah=1 and --with-blah=0 to en/disable options |
| 68 |
petsc_enable() { |
| 69 |
use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" |
Archives