From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: ChangeLog refmac-5.6.0085.ebuild |
Date: | Thu, 30 Sep 2010 08:06:47 |
Message-Id: | 20100930080644.798F620051@flycatcher.gentoo.org |
1 | jlec 10/09/30 08:06:44 |
2 | |
3 | Modified: ChangeLog |
4 | Added: refmac-5.6.0085.ebuild |
5 | Log: |
6 | Version Bump |
7 | |
8 | (Portage version: 2.2_rc88/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.18 sci-chemistry/refmac/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.18&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.18&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?r1=1.17&r2=1.18 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v |
20 | retrieving revision 1.17 |
21 | retrieving revision 1.18 |
22 | diff -u -r1.17 -r1.18 |
23 | --- ChangeLog 27 Sep 2010 15:09:53 -0000 1.17 |
24 | +++ ChangeLog 30 Sep 2010 08:06:44 -0000 1.18 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for sci-chemistry/refmac |
27 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.17 2010/09/27 15:09:53 jlec Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.18 2010/09/30 08:06:44 jlec Exp $ |
30 | + |
31 | +*refmac-5.6.0085 (30 Sep 2010) |
32 | + |
33 | + 30 Sep 2010; Justin Lecher <jlec@g.o> |
34 | + +files/5.6.0085-allow-dynamic-linking.patch, +refmac-5.6.0085.ebuild: |
35 | + Version Bump |
36 | |
37 | *refmac-5.6.0084 (27 Sep 2010) |
38 | |
39 | |
40 | |
41 | |
42 | 1.1 sci-chemistry/refmac/refmac-5.6.0085.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0085.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0085.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: refmac-5.6.0085.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2010 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0085.ebuild,v 1.1 2010/09/30 08:06:44 jlec Exp $ |
52 | |
53 | EAPI="2" |
54 | |
55 | inherit fortran base toolchain-funcs versionator |
56 | |
57 | MY_PV="$(get_version_component_range 1-2)_source_v${PV}" |
58 | |
59 | DESCRIPTION="Macromolecular crystallographic refinement program" |
60 | HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/" |
61 | SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz |
62 | test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" |
63 | |
64 | SLOT="0" |
65 | LICENSE="ccp4" |
66 | KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
67 | IUSE="test" |
68 | |
69 | RDEPEND=" |
70 | sci-libs/ccp4-libs |
71 | sci-libs/mmdb |
72 | >sci-libs/monomer-db-1 |
73 | virtual/blas |
74 | virtual/lapack" |
75 | DEPEND="${RDEPEND}" |
76 | |
77 | S="${WORKDIR}" |
78 | |
79 | PATCHES=( |
80 | "${FILESDIR}"/${PV}-allow-dynamic-linking.patch |
81 | ) |
82 | |
83 | src_prepare() { |
84 | base_src_prepare |
85 | use test && epatch "${FILESDIR}"/5.5-test.log.patch |
86 | } |
87 | |
88 | src_compile() { |
89 | emake \ |
90 | FC=$(tc-getFC) \ |
91 | CC=$(tc-getCC) \ |
92 | CXX=$(tc-getCXX) \ |
93 | COPTIM="${CFLAGS}" \ |
94 | FOPTIM="${FFLAGS:- -O2}" \ |
95 | VERSION="" \ |
96 | XFFLAGS="-fno-second-underscore" \ |
97 | LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ |
98 | LLIBLAPACK="$(pkg-config --libs lapack blas)" \ |
99 | || die |
100 | } |
101 | |
102 | src_test() { |
103 | einfo "Starting tests ..." |
104 | export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" |
105 | export CCP4_TEST="${WORKDIR}"/test-framework |
106 | export CCP4_SCR="${T}" |
107 | ln -sf refmac "${S}"/refmac5 |
108 | sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb |
109 | ccp4-run-thorough-tests -v test_refmac5 || die |
110 | } |
111 | |
112 | src_install() { |
113 | for i in refmac libcheck; do |
114 | exeinto /usr/libexec/ccp4/bin/ |
115 | doexe ${i} || die |
116 | dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} |
117 | done |
118 | dosym refmac /usr/bin/refmac5 || die |
119 | } |