[gentoo-commits] gentoo-x86 commit in sci-biology/vienna-rna: ChangeLog vienna-rna-1.7.2.ebuild vienna-rna-1.6.1.ebuild vienna-rna-1.6.5.ebuild

[Markus Dittrich (markusle)]

markusle    08/08/29 01:21:39

  Modified:             ChangeLog
  Added:                vienna-rna-1.7.2.ebuild
  Removed:              vienna-rna-1.6.1.ebuild vienna-rna-1.6.5.ebuild
  Log:
  Version bump and removed old ebuilds (fixes bug #235943).
  (Portage version: 2.2_rc8/cvs/Linux 2.6.26-SENTINEL-2 i686)

Revision  Changes    Path
1.17                 sci-biology/vienna-rna/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.17&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.17&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.16&r2=1.17

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- ChangeLog	6 Aug 2008 15:06:58 -0000	1.16
+++ ChangeLog	29 Aug 2008 01:21:38 -0000	1.17
@@ -1,6 +1,14 @@
 # ChangeLog for sci-biology/vienna-rna
 # Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.16 2008/08/06 15:06:58 ulm Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.17 2008/08/29 01:21:38 markusle Exp $
+
+*vienna-rna-1.7.2 (28 Aug 2008)
+
+  28 Aug 2008; Markus Dittrich <markusle@g.o>
+  +files/vienna-rna-1.7.2-gcc4.3.patch, -vienna-rna-1.6.1.ebuild,
+  -vienna-rna-1.6.5.ebuild, +vienna-rna-1.7.2.ebuild:
+  Version bump and removed old ebuilds (fixes bug #235943). Thanks much to
+  Chad A. Simmons <chad.simmons@××××××××××.org> for his ebuild and patches.
 
   06 Aug 2008; Ulrich Mueller <ulm@g.o> metadata.xml:
   Add USE flag description to metadata wrt GLEP 56.



1.1                  sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild?rev=1.1&content-type=text/plain

Index: vienna-rna-1.7.2.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.7.2.ebuild,v 1.1 2008/08/29 01:21:38 markusle Exp $

inherit toolchain-funcs multilib eutils versionator

DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison"
LICENSE="vienna-rna"
HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA"
SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz"

SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~ppc"

DEPEND="dev-lang/perl
	media-libs/gd"

S="${WORKDIR}/ViennaRNA-${PV}"

src_unpack() {
	unpack ${A}
	cd "${S}"
	epatch "${FILESDIR}"/${PN}-1.6.5-c-fixes.patch
	epatch "${FILESDIR}"/${P}-gcc4.3.patch
}

src_compile() {
	econf --with-cluster || die "Configuration failed."
	sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/$(get_libdir):" \
		-e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \
		-i RNAforester/g2-0.70/Makefile \
			|| die "Failed patching RNAForester build system."
	emake || die "Compilation failed."

	cd "${S}"/Readseq
	sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \
		-i Makefile || die "Failed patching readseq Makefile."
	make || die "Failed to compile readseq."
	# TODO: Add (optional?) support for the NCBI toolkit.
}

src_install() {
	make install DESTDIR="${D}" || die "Installation failed."
	dodoc AUTHORS ChangeLog NEWS README THANKS \
		|| die "Failed to install documentation."
	newbin Readseq/readseq readseq-vienna \
		|| die "Installing readseq failed."
	dodoc Readseq/Readseq.help || die \
		"Readseq Documentation installation failed."
	newdoc Readseq/Readme README.readseq && \
		newdoc Readseq/Formats Formats.readseq \
		|| die "Installing readseq Readme failed."
}