Gentoo Archives: gentoo-commits

From: Benda XU <heroxbd@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/numpy/files/, dev-python/numpy/
Date: Mon, 24 Jun 2019 04:31:25
Message-Id: 1561350671.052af06fde103f99aa77499bd5b76dc3ae95b933.heroxbd@gentoo
1 commit: 052af06fde103f99aa77499bd5b76dc3ae95b933
2 Author: Benda Xu <heroxbd <AT> gentoo <DOT> org>
3 AuthorDate: Mon Jun 24 04:30:36 2019 +0000
4 Commit: Benda XU <heroxbd <AT> gentoo <DOT> org>
5 CommitDate: Mon Jun 24 04:31:11 2019 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=052af06f
7
8 dev-python/numpy: add back numpy-1.8.2.
9
10 It is a reverse dependency of dev-python/scientificpython and
11 sci-libs/mmtk.
12
13 Package-Manager: Portage-2.3.52, Repoman-2.3.12
14 Signed-off-by: Benda Xu <heroxbd <AT> gentoo.org>
15
16 dev-python/numpy/Manifest | 4 +
17 .../numpy/files/numpy-1.8.0-no-hardcode-blas.patch | 25 ++++
18 dev-python/numpy/numpy-1.8.2.ebuild | 146 +++++++++++++++++++++
19 3 files changed, 175 insertions(+)
20
21 diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest
22 index f080e969086..7df64371849 100644
23 --- a/dev-python/numpy/Manifest
24 +++ b/dev-python/numpy/Manifest
25 @@ -1,12 +1,16 @@
26 DIST numpy-1.14.5.zip 4904624 BLAKE2B 14d266bf1139b9539e39d08a6537e2b772e80bf46a0769cbb06b63ba54858c9284f6d0e8a19627a4d99f2c2638e9a4031bf4d4aaf773eaf34b7203d131636dc0 SHA512 e131f9fa815084e334b59c5d9abd8de0088ad1dfefecf8615ad7deca0b54b0dfa0446c8de99c90670ea9fcabea9980bd171618a5b9032c1937b597a5ce363c5b
27 DIST numpy-1.15.4.zip 4473522 BLAKE2B c030ef4a06c84091eec11b6602422468bd0674489a2c7fea1230132cd3a3ca1b10ec87eeb6788f2f263943f9ac43026dc1e7f0f5f1d52e9d1cc6934a5d361090 SHA512 9e0516da04368f0353fb7e3cc2c72e1ec936042908309732a298405bd7111e712899627b82f3674295b611e0ebfd74ef91d693f065fe9cb03dc7de23d1e72676
28 DIST numpy-1.16.1.zip 5070040 BLAKE2B 0429d27d88ec97e207822c9c7fa759453bbef97d1d5fdf3e68dab21ca098a6321e2e57d85561dd99084d190b8ed6fce20f00b421c8d14a249fc45dc1ea09569e SHA512 e4adce4f40a3cb6ac482f82db9fcd079179b03b0e878920cfc7d98b9f622adab997c68af892b209f417d5f31b4123a1c5ff5c07cf5b0aaa496d8be6c8354bde8
29 +DIST numpy-1.8.2.tar.gz 3792998 BLAKE2B 00d22c72ab6f919626d3fba0edc477fb9c19f9c299f78cff6102e1860e3d1baec8f3b17aa23be797e9a34630428174de3f3b630c3f05c5340024dc6314fad8cd SHA512 996e6b8e2d42f223e44660f56bf73eb8ab124f400d89218f8f5e4d7c9860ada44a4d7c54526137b0695c7a10f36e8834fbf0d42b7cb20bcdb5d5c245d673385c
30 DIST numpy-html-1.14.5.zip 11197881 BLAKE2B 00cac3c5be07f644328acd9ed155a6fc07ed7d7380584732bb3ac03562c8705cd152612f461d5dc251dabe0be4ba45593165a961496e351110e1aa7598c37370 SHA512 578d31660de4e1f57310b3a2137cefea17228f40046eef1689fb6d9302f0fe0fda5aaf473c3b8c69ae781049950022321593ec891a5640e3c36c886ab3bf4383
31 DIST numpy-html-1.15.4.zip 11158615 BLAKE2B eb264cd51fd61b389e858300d96be63f8e2eeaa0b7346beac571b62d96867d6820c19d5043a6f81088dc52b1e4d7f3f295e02ff5ff90351b0feccf657ce90001 SHA512 1cad60013f374f456bbb1fb6161545a94e252205c28054f9b33cde65330772ab243339289517a8825957a21e210455d33bcc0b9c588052c49c88257b1b04facb
32 DIST numpy-html-1.16.1.zip 12132467 BLAKE2B 050a8cba160e36a4c547f1b67b8ab2b9220c9841a9f8343dce6f3221313505530a1687efa2116384a03d3bc9172a0298b4ea5ece2f423841d595e45f565ccbc2 SHA512 5af356313363e00f05db560902cc7578162c7d2ab9c1ef0f3713854682b63d76297d55eb9aac0dfc7f4b687ccea93a53462e2082ef1270e29e19680e1222b34d
33 +DIST numpy-html-1.8.1.zip 9703711 BLAKE2B 1f9d9cb4e65fc2f03d07da9bc34de9c8c4f93f5267689abccb0e2383b23babfed52ae6c3969738e78eeca7b32f49c90f9f7bb92dd432a6b87e082b67c1f214a5 SHA512 1d52c657931f4eebb5325159444aedd969b201f5098855058f1ef632dc8677372d632291154ebc3db9869cdb8abf7eb820eade1a9edba2d6be1ae918cb38c071
34 DIST numpy-ref-1.14.5.pdf 4855150 BLAKE2B aa924542346bd06b1aa8b11ceb8eb5de936cfdccc10a8339720a297e27b5b34961044eb8db8dd7b9a19ba93b3cbf76ec278a9a50724653aafd2b9d57a00007f2 SHA512 717f58fcb1aa66ecc5f5d4c11c9923d2beb21a1b1a0ca1e46f3622c69f1122fd0547b7f7abaf6de008e2aa988b2453af3c2590877f5596fb6642479ece651746
35 DIST numpy-ref-1.15.4.pdf 4843444 BLAKE2B 26154930a8c881f49e7eb7d9540d1deba27baed1acb15dbacd42a659c05f50605cd44b63b2474e66d1d22851145cc65b3e3f26302f8966e141cbd2afc666c654 SHA512 aebff74389e785bd588ccc287329aea4dbc3ef51b46fbffdf088853342fea724f79f712733e453877949e756a52e89de3b257e5feba86e830df84ed8f9bb0e30
36 DIST numpy-ref-1.16.1.pdf 5175448 BLAKE2B 5cd692a0fc825216560dbbf48738a49b794973d4539bd778f0f9a2f7f72b32d3061675f9a76db4cbfbb38eec0793c70046180fcb07e23ffc6177dee76b16bb92 SHA512 6cad03e30d7c2204fb899f4e4d1167fefade60d20dedf0ea87ac15c70139fbcca8789cdf17af5a2d221ba06eb78e9376b4b542621f9d78772041c83ab2405d1a
37 +DIST numpy-ref-1.8.1.pdf 5348248 BLAKE2B f087fbbd3c789adebd2902db0a2acc8a8748ccbb5a1e7e064effdc91e92c7dcf087ae36436fc52d7afa12a12ca2fc0f5f5617177bcd8b9745a7155acd10d71fc SHA512 340dd8f47430f24fea81bb3a8674e1a58f4290a9d1c5d64bac96d50b31a94a770e78381e42daf8b0a6a90cefe5cafe86b0c89f7cc7635a042a7e85eb74bdbdf5
38 DIST numpy-user-1.14.5.pdf 574418 BLAKE2B 80738f1760932fa74b07334d1a355ba3ce319e0b03fe1428d0b3497466fa1164ccbad84969cb7bc8daebb5525094f0d0c7710e1d661b1c6bbaca0669bfcbf875 SHA512 fb00305408c56ee203ed71ac042474592e7e933f14a639f6dce0f6dc80206c13b844c2425a919f9072a114c7af2c2f9f85b78a07ba3874259e5d173290e51a13
39 DIST numpy-user-1.15.4.pdf 596191 BLAKE2B 1387b7aac9cccba4b7ce259391f56372959db35c4ddce111afb9949347ebcf3290e7d3fb5b1b2d2e7850911259cddb07edfe104c1396ae8e31a58a81e9293f16 SHA512 2089753b48412f094b279c378be1d221ec9b171957171a4e26b4589d594e00b4f66b6f8a88a7eb665e8c3fa3e6ed505d63da80d4d01ced041544b97ea56fe212
40 DIST numpy-user-1.16.1.pdf 592508 BLAKE2B 88ef7aac2998fd8eeebc3ab92df9ad9ba139b67ab0442cd4ed91cdc7b1cd72acf7905468118df25634640b709106758455c7d316539b941d7760010b8135fafa SHA512 d089b4c663f92c38aa075c37974df757bdc457f75980737477a4477f67311d28149bc4c20f5d1cd0877221a78e5a9ff10702b1ebcc8ab062d328cdda4087d0f7
41 +DIST numpy-user-1.8.1.pdf 408305 BLAKE2B 2956e42ebad45b021f72c7e71d357d953ea8a26639b4c6e81dbe1718052304ac5ce1a7f96646d94ad48bf737ddc6962fcbc304e31dfce32b85cb8165b0ada6e0 SHA512 9e646e89e7e67834fa596e43082b43842d1c59287d22fd8d20c9f0a1d3d56a518a08cc2c036de4972ad0d6d9d3c2f56e2210f76e7244d3f7547b5204d84d3c7c
42
43 diff --git a/dev-python/numpy/files/numpy-1.8.0-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.8.0-no-hardcode-blas.patch
44 new file mode 100644
45 index 00000000000..eaf30dd8e13
46 --- /dev/null
47 +++ b/dev-python/numpy/files/numpy-1.8.0-no-hardcode-blas.patch
48 @@ -0,0 +1,25 @@
49 +patch to allow any blas (c or f77) to simulate the
50 +special treatment atlas libs have in numpy.
51 +2013: numpy.distutils still horrendous code
52 +
53 +--- numpy/distutils/system_info.py.orig 2013-11-25 19:54:45.760217851 -0800
54 ++++ numpy/distutils/system_info.py 2013-11-25 20:00:26.575310888 -0800
55 +@@ -293,17 +293,7 @@
56 + 1 - display warning message
57 + 2 - raise error
58 + """
59 +- cl = {'atlas': atlas_info, # use lapack_opt or blas_opt instead
60 +- 'atlas_threads': atlas_threads_info, # ditto
61 +- 'atlas_blas': atlas_blas_info,
62 +- 'atlas_blas_threads': atlas_blas_threads_info,
63 +- 'lapack_atlas': lapack_atlas_info, # use lapack_opt instead
64 +- 'lapack_atlas_threads': lapack_atlas_threads_info, # ditto
65 +- 'mkl': mkl_info,
66 +- 'openblas': openblas_info, # use blas_opt instead
67 +- 'lapack_mkl': lapack_mkl_info, # use lapack_opt instead
68 +- 'blas_mkl': blas_mkl_info, # use blas_opt instead
69 +- 'x11': x11_info,
70 ++ cl = {'x11': x11_info,
71 + 'fft_opt': fft_opt_info,
72 + 'fftw': fftw_info,
73 + 'fftw2': fftw2_info,
74
75 diff --git a/dev-python/numpy/numpy-1.8.2.ebuild b/dev-python/numpy/numpy-1.8.2.ebuild
76 new file mode 100644
77 index 00000000000..e9e6e79381b
78 --- /dev/null
79 +++ b/dev-python/numpy/numpy-1.8.2.ebuild
80 @@ -0,0 +1,146 @@
81 +# Copyright 1999-2019 Gentoo Authors
82 +# Distributed under the terms of the GNU General Public License v2
83 +
84 +EAPI=5
85 +
86 +PYTHON_COMPAT=( python2_7 )
87 +PYTHON_REQ_USE="threads(+)"
88 +
89 +FORTRAN_NEEDED=lapack
90 +
91 +inherit distutils-r1 eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator
92 +
93 +DOC_PV="1.8.1"
94 +DOC_P="${PN}-${DOC_PV}"
95 +
96 +DESCRIPTION="Fast array and numerical python library"
97 +HOMEPAGE="https://www.numpy.org"
98 +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
99 + doc? (
100 + http://docs.scipy.org/doc/${DOC_P}/${PN}-html-${DOC_PV}.zip
101 + http://docs.scipy.org/doc/${DOC_P}/${PN}-ref-${DOC_PV}.pdf
102 + http://docs.scipy.org/doc/${DOC_P}/${PN}-user-${DOC_PV}.pdf
103 + )"
104 +# It appears the docs haven't been upgraded, still @ 1.8.1
105 +LICENSE="BSD"
106 +SLOT="0"
107 +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
108 +IUSE="doc lapack test"
109 +
110 +RDEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
111 + lapack? ( virtual/cblas virtual/lapack )"
112 +DEPEND="${RDEPEND}
113 + doc? ( app-arch/unzip )
114 + lapack? ( virtual/pkgconfig )
115 + test? ( dev-python/nose[${PYTHON_USEDEP}] )"
116 +
117 +# Uses distutils.command.config.
118 +DISTUTILS_IN_SOURCE_BUILD=1
119 +
120 +PATCHES=(
121 + "${FILESDIR}"/${PN}-1.8.0-no-hardcode-blas.patch
122 +)
123 +
124 +src_unpack() {
125 + default
126 + if use doc; then
127 + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
128 + fi
129 +}
130 +
131 +pc_incdir() {
132 + $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
133 + sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
134 +}
135 +
136 +pc_libdir() {
137 + $(tc-getPKG_CONFIG) --libs-only-L $@ | \
138 + sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
139 +}
140 +
141 +pc_libs() {
142 + $(tc-getPKG_CONFIG) --libs-only-l $@ | \
143 + sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
144 + -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
145 + | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
146 +}
147 +
148 +python_prepare_all() {
149 + if use lapack; then
150 + append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)"
151 + local incdir="${EPREFIX}"/usr/include
152 + local libdir="${EPREFIX}"/usr/$(get_libdir)
153 + # make sure _dotblas.so gets built
154 + sed -i -e '/NO_ATLAS_INFO/,+1d' numpy/core/setup.py || die
155 + cat >> site.cfg <<-EOF
156 + [blas]
157 + include_dirs = $(pc_incdir cblas):${incdir}
158 + library_dirs = $(pc_libdir cblas blas):${libdir}
159 + blas_libs = $(pc_libs cblas blas)
160 + [lapack]
161 + library_dirs = $(pc_libdir lapack):${libdir}
162 + lapack_libs = $(pc_libs lapack)
163 + EOF
164 + else
165 + export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
166 + fi
167 +
168 + export CC="$(tc-getCC) ${CFLAGS}"
169 +
170 + append-flags -fno-strict-aliasing
171 +
172 + # See progress in http://projects.scipy.org/scipy/numpy/ticket/573
173 + # with the subtle difference that we don't want to break Darwin where
174 + # -shared is not a valid linker argument
175 + if [[ ${CHOST} != *-darwin* ]]; then
176 + append-ldflags -shared
177 + fi
178 +
179 + # only one fortran to link with:
180 + # linking with cblas and lapack library will force
181 + # autodetecting and linking to all available fortran compilers
182 + append-fflags -fPIC
183 + if use lapack; then
184 + NUMPY_FCONFIG="config_fc --noopt --noarch"
185 + # workaround bug 335908
186 + [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
187 + fi
188 +
189 + # don't version f2py, we will handle it.
190 + sed -i -e '/f2py_exe/s:+os\.path.*$::' numpy/f2py/setup.py || die
191 +
192 + distutils-r1_python_prepare_all
193 +}
194 +
195 +python_compile() {
196 + distutils-r1_python_compile ${NUMPY_FCONFIG}
197 +}
198 +
199 +python_test() {
200 + distutils_install_for_testing ${NUMPY_FCONFIG}
201 +
202 + cd "${TMPDIR}" || die
203 + ${EPYTHON} -c "
204 +import numpy, sys
205 +r = numpy.test(label='full', verbose=3)
206 +sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
207 +}
208 +
209 +python_install() {
210 + distutils-r1_python_install ${NUMPY_FCONFIG}
211 +}
212 +
213 +python_install_all() {
214 + distutils-r1_python_install_all
215 +
216 + dodoc COMPATIBILITY DEV_README.txt THANKS.txt
217 +
218 + if use doc; then
219 + dohtml -r "${WORKDIR}"/html/*
220 + dodoc "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf
221 + fi
222 +
223 + docinto f2py
224 + dodoc numpy/f2py/docs/*.txt
225 + doman numpy/f2py/f2py.1
226 +}