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jlec 10/11/26 13:57:26 |
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|
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Modified: metadata.xml ChangeLog |
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Added: plink-1.07-r1.ebuild |
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Removed: plink-1.06.ebuild |
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Log: |
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Fixes for #335975, respecting LDFLAGS/CXXFLAGS, supporting lapack, making R support optional |
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|
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(Portage version: 2.2.0_alpha5/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.2 sci-biology/plink/metadata.xml |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/metadata.xml?rev=1.2&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/metadata.xml?rev=1.2&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/metadata.xml?r1=1.1&r2=1.2 |
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|
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Index: metadata.xml |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/plink/metadata.xml,v |
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retrieving revision 1.1 |
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retrieving revision 1.2 |
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diff -u -r1.1 -r1.2 |
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--- metadata.xml 7 Mar 2009 04:37:27 -0000 1.1 |
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+++ metadata.xml 26 Nov 2010 13:57:26 -0000 1.2 |
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@@ -10,5 +10,8 @@ |
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<flag name='webcheck'> |
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add support for online update checking every time the program starts |
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</flag> |
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+ <flag name='R'> |
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+ add support R language |
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+ </flag> |
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</use> |
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</pkgmetadata> |
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|
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|
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|
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1.8 sci-biology/plink/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?rev=1.8&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?rev=1.8&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/ChangeLog?r1=1.7&r2=1.8 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v |
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retrieving revision 1.7 |
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retrieving revision 1.8 |
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diff -u -r1.7 -r1.8 |
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--- ChangeLog 5 Apr 2010 12:13:23 -0000 1.7 |
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+++ ChangeLog 26 Nov 2010 13:57:26 -0000 1.8 |
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@@ -1,33 +1,11 @@ |
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# ChangeLog for sci-biology/plink |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.7 2010/04/05 12:13:23 phajdan.jr Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/ChangeLog,v 1.8 2010/11/26 13:57:26 jlec Exp $ |
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|
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- 05 Apr 2010; Pawel Hajdan jr <phajdan.jr@g.o> plink-1.07.ebuild: |
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- x86 stable wrt bug #311835 |
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+*plink-1.07-r1 (26 Nov 2010) |
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|
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- 29 Mar 2010; Pacho Ramos <pacho@g.o> plink-1.07.ebuild: |
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- amd64 stable, bug 311835 |
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- |
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-*plink-1.07 (27 Jan 2010) |
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- |
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- 27 Jan 2010; Andrey Kislyuk <weaver@g.o> +plink-1.07.ebuild: |
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- Version bump |
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- |
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- 05 Aug 2009; Markus Meier <maekke@g.o> plink-1.06.ebuild: |
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- x86 stable, bug #279345 |
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- |
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- 02 Aug 2009; <chainsaw@g.o> plink-1.06.ebuild: |
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- Marked stable on AMD64 as requested by Andrey "weaver" Kislyuk |
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- <weaver@g.o> in bug #279345. Arch-tested by Chad A. Simmons who |
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- reports he has no test-suite; reporter confirmed and agreed compile-test |
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- was sufficient. |
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- |
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-*plink-1.06 (21 Jun 2009) |
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- |
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- 21 Jun 2009; Andrey Kislyuk <weaver@g.o> |
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- -files/plink-1.05-gcc43.patch, -plink-1.05.ebuild, +plink-1.06.ebuild: |
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- Version bump, change name to follow Debian, and drop old files |
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- |
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- 06 Mar 2009; Andrey Kislyuk <weaver@g.o> ChangeLog: |
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- New package, ebuild written by Neil Shephard <nshephard@×××××.com> and me |
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+ 26 Nov 2010; Justin Lecher <jlec@g.o> +files/1.07-flags.patch, |
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+ -plink-1.06.ebuild, +plink-1.07-r1.ebuild, metadata.xml: |
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+ Fixes for #335975, respecting LDFLAGS/CXXFLAGS, supporting lapack, making R |
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+ support optional |
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|
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|
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|
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|
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1.1 sci-biology/plink/plink-1.07-r1.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/plink-1.07-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/plink/plink-1.07-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: plink-1.07-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.07-r1.ebuild,v 1.1 2010/11/26 13:57:26 jlec Exp $ |
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|
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EAPI="2" |
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|
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inherit eutils toolchain-funcs |
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|
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DESCRIPTION="Whole genome association analysis toolset" |
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HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/" |
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SRC_URI="http://pngu.mgh.harvard.edu/~purcell/plink/dist/${P}-src.zip" |
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|
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LICENSE="GPL-2" |
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SLOT="0" |
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IUSE="lapack -webcheck R" |
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KEYWORDS="~amd64 ~x86" |
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|
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DEPEND="app-arch/unzip" |
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RDEPEND="lapack? ( virtual/lapack )" |
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|
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S="${WORKDIR}/${P}-src" |
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|
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# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. |
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# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. |
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|
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src_prepare() { |
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epatch "${FILESDIR}"/${PV}-flags.patch |
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use webcheck || sed -i '/WITH_WEBCHECK =/ s/^/#/' "${S}/Makefile" || die |
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use R || sed -i '/WITH_R_PLUGINS =/ s/^/#/' "${S}/Makefile" || die |
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use lapack || sed -i '/WITH_LAPACK =/ s/^/#/' "${S}/Makefile" || die |
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} |
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|
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src_compile() { |
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emake \ |
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CXX_UNIX=$(tc-getCXX) \ |
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|| die |
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} |
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|
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src_install() { |
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newbin plink p-link || die |
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dodoc README.txt || die |
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} |