From: | Andrew Ammerlaan <andrewammerlaan@××××××.net> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] proj/sci:master commit in: sci-biology/MaSuRCA/ |
Date: | Mon, 01 Feb 2021 07:41:32 |
Message-Id: | 1612165274.295c07c0f1dc210afcb0131f0451f86b3c83b1b3.andrewammerlaan@gentoo |
1 | commit: 295c07c0f1dc210afcb0131f0451f86b3c83b1b3 |
2 | Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> |
3 | AuthorDate: Mon Feb 1 07:41:14 2021 +0000 |
4 | Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> |
5 | CommitDate: Mon Feb 1 07:41:14 2021 +0000 |
6 | URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=295c07c0 |
7 | |
8 | sci-biology/MaSuRCA: version bump 4.0.1 |
9 | |
10 | Package-Manager: Portage-3.0.14, Repoman-3.0.2 |
11 | Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> |
12 | |
13 | .../{MaSuRCA-3.2.2.ebuild => MaSuRCA-4.0.1.ebuild} | 26 ++++++++-------------- |
14 | 1 file changed, 9 insertions(+), 17 deletions(-) |
15 | |
16 | diff --git a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild |
17 | similarity index 52% |
18 | rename from sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild |
19 | rename to sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild |
20 | index 2f2f9ddbd..8e6d2925e 100644 |
21 | --- a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild |
22 | +++ b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild |
23 | @@ -1,35 +1,27 @@ |
24 | -# Copyright 1999-2017 Gentoo Foundation |
25 | +# Copyright 1999-2021 Gentoo Authors |
26 | # Distributed under the terms of the GNU General Public License v2 |
27 | |
28 | -EAPI=6 |
29 | +EAPI=7 |
30 | |
31 | DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore" |
32 | HOMEPAGE="http://www.genome.umd.edu/masurca.html |
33 | http://bioinformatics.oxfordjournals.org/content/29/21/2669 |
34 | - http://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" |
35 | -SRC_URI="${P}.tar.gz |
36 | - ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf" |
37 | + https://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf" |
38 | +SRC_URI="https://github.com/alekseyzimin/masurca/releases/download/v${PV}/${P}.tar.gz" |
39 | |
40 | LICENSE="BSD GPL-2 GPL-3" |
41 | SLOT="0" |
42 | -KEYWORDS="" |
43 | -IUSE="" |
44 | +KEYWORDS="~amd64" |
45 | |
46 | -DEPEND=">=dev-lang/perl-5.8 |
47 | - app-arch/bzip2" |
48 | +DEPEND=" |
49 | + >=dev-lang/perl-5.8 |
50 | + app-arch/bzip2 |
51 | +" |
52 | RDEPEND="${DEPEND}" |
53 | |
54 | -RESTRICT="fetch" |
55 | - |
56 | -src_configure(){ |
57 | - ./install.sh || die |
58 | -} |
59 | - |
60 | src_compile(){ |
61 | ./install.sh || die |
62 | } |
63 | - |
64 | src_install(){ |
65 | dobin masurca |
66 | - dodoc sr_config_example.txt |
67 | } |