Gentoo Archives: gentoo-commits

From: Andrew Ammerlaan <andrewammerlaan@××××××.net>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/MaSuRCA/
Date: Mon, 01 Feb 2021 07:41:32
Message-Id: 1612165274.295c07c0f1dc210afcb0131f0451f86b3c83b1b3.andrewammerlaan@gentoo
1 commit: 295c07c0f1dc210afcb0131f0451f86b3c83b1b3
2 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
3 AuthorDate: Mon Feb 1 07:41:14 2021 +0000
4 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
5 CommitDate: Mon Feb 1 07:41:14 2021 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=295c07c0
7
8 sci-biology/MaSuRCA: version bump 4.0.1
9
10 Package-Manager: Portage-3.0.14, Repoman-3.0.2
11 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
12
13 .../{MaSuRCA-3.2.2.ebuild => MaSuRCA-4.0.1.ebuild} | 26 ++++++++--------------
14 1 file changed, 9 insertions(+), 17 deletions(-)
15
16 diff --git a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild
17 similarity index 52%
18 rename from sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild
19 rename to sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild
20 index 2f2f9ddbd..8e6d2925e 100644
21 --- a/sci-biology/MaSuRCA/MaSuRCA-3.2.2.ebuild
22 +++ b/sci-biology/MaSuRCA/MaSuRCA-4.0.1.ebuild
23 @@ -1,35 +1,27 @@
24 -# Copyright 1999-2017 Gentoo Foundation
25 +# Copyright 1999-2021 Gentoo Authors
26 # Distributed under the terms of the GNU General Public License v2
27
28 -EAPI=6
29 +EAPI=7
30
31 DESCRIPTION="de Bruijn and OLC assembler for Sanger, Roche 454, Illumina, Pacbio, Nanopore"
32 HOMEPAGE="http://www.genome.umd.edu/masurca.html
33 http://bioinformatics.oxfordjournals.org/content/29/21/2669
34 - http://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf"
35 -SRC_URI="${P}.tar.gz
36 - ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf"
37 + https://biorxiv.org/content/biorxiv/early/2016/07/26/066100.full.pdf"
38 +SRC_URI="https://github.com/alekseyzimin/masurca/releases/download/v${PV}/${P}.tar.gz"
39
40 LICENSE="BSD GPL-2 GPL-3"
41 SLOT="0"
42 -KEYWORDS=""
43 -IUSE=""
44 +KEYWORDS="~amd64"
45
46 -DEPEND=">=dev-lang/perl-5.8
47 - app-arch/bzip2"
48 +DEPEND="
49 + >=dev-lang/perl-5.8
50 + app-arch/bzip2
51 +"
52 RDEPEND="${DEPEND}"
53
54 -RESTRICT="fetch"
55 -
56 -src_configure(){
57 - ./install.sh || die
58 -}
59 -
60 src_compile(){
61 ./install.sh || die
62 }
63 -
64 src_install(){
65 dobin masurca
66 - dodoc sr_config_example.txt
67 }