From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: refmac-5.6.0079.ebuild ChangeLog |
Date: | Fri, 02 Jul 2010 06:36:12 |
Message-Id: | 20100702063610.4BB6D2C621@corvid.gentoo.org |
1 | jlec 10/07/02 06:36:10 |
2 | |
3 | Modified: ChangeLog |
4 | Added: refmac-5.6.0079.ebuild |
5 | Log: |
6 | Version Bump |
7 | (Portage version: 2.2_rc67/cvs/Linux x86_64) |
8 | |
9 | Revision Changes Path |
10 | 1.12 sci-chemistry/refmac/ChangeLog |
11 | |
12 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.12&view=markup |
13 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.12&content-type=text/plain |
14 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?r1=1.11&r2=1.12 |
15 | |
16 | Index: ChangeLog |
17 | =================================================================== |
18 | RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v |
19 | retrieving revision 1.11 |
20 | retrieving revision 1.12 |
21 | diff -u -r1.11 -r1.12 |
22 | --- ChangeLog 28 Jun 2010 04:48:15 -0000 1.11 |
23 | +++ ChangeLog 2 Jul 2010 06:36:10 -0000 1.12 |
24 | @@ -1,6 +1,11 @@ |
25 | # ChangeLog for sci-chemistry/refmac |
26 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
27 | -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.11 2010/06/28 04:48:15 jlec Exp $ |
28 | +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.12 2010/07/02 06:36:10 jlec Exp $ |
29 | + |
30 | +*refmac-5.6.0079 (02 Jul 2010) |
31 | + |
32 | + 02 Jul 2010; Justin Lecher <jlec@g.o> +refmac-5.6.0079.ebuild: |
33 | + Version Bump |
34 | |
35 | *refmac-5.6.0078 (28 Jun 2010) |
36 | |
37 | |
38 | |
39 | |
40 | 1.1 sci-chemistry/refmac/refmac-5.6.0079.ebuild |
41 | |
42 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0079.ebuild?rev=1.1&view=markup |
43 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0079.ebuild?rev=1.1&content-type=text/plain |
44 | |
45 | Index: refmac-5.6.0079.ebuild |
46 | =================================================================== |
47 | # Copyright 1999-2010 Gentoo Foundation |
48 | # Distributed under the terms of the GNU General Public License v2 |
49 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0079.ebuild,v 1.1 2010/07/02 06:36:10 jlec Exp $ |
50 | |
51 | EAPI="2" |
52 | |
53 | inherit fortran base toolchain-funcs versionator |
54 | |
55 | MY_PV="$(get_version_component_range 1-2)_source_v${PV}" |
56 | |
57 | DESCRIPTION="Macromolecular crystallographic refinement program" |
58 | HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/" |
59 | SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz |
60 | test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" |
61 | |
62 | SLOT="0" |
63 | LICENSE="ccp4" |
64 | KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
65 | IUSE="test" |
66 | |
67 | RDEPEND=" |
68 | sci-libs/ccp4-libs |
69 | sci-libs/mmdb |
70 | >sci-libs/monomer-db-1 |
71 | virtual/blas |
72 | virtual/lapack" |
73 | DEPEND="${RDEPEND}" |
74 | |
75 | S="${WORKDIR}" |
76 | |
77 | PATCHES=( |
78 | "${FILESDIR}"/${PV/79/78}-allow-dynamic-linking.patch |
79 | ) |
80 | |
81 | src_prepare() { |
82 | base_src_prepare |
83 | use test && epatch "${FILESDIR}"/5.5-test.log.patch |
84 | } |
85 | |
86 | src_compile() { |
87 | emake \ |
88 | FC=$(tc-getFC) \ |
89 | CC=$(tc-getCC) \ |
90 | CXX=$(tc-getCXX) \ |
91 | COPTIM="${CFLAGS}" \ |
92 | FOPTIM="${FFLAGS:- -O2}" \ |
93 | VERSION="" \ |
94 | XFFLAGS="-fno-second-underscore" \ |
95 | LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ |
96 | LLIBLAPACK="$(pkg-config --libs lapack blas)" \ |
97 | || die |
98 | } |
99 | |
100 | src_test() { |
101 | einfo "Starting tests ..." |
102 | export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" |
103 | export CCP4_TEST="${WORKDIR}"/test-framework |
104 | export CCP4_SCR="${T}" |
105 | ln -sf refmac "${S}"/refmac5 |
106 | sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb |
107 | ccp4-run-thorough-tests -v test_refmac5 || die |
108 | } |
109 | |
110 | src_install() { |
111 | for i in refmac libcheck; do |
112 | exeinto /usr/libexec/ccp4/bin/ |
113 | doexe ${i} || die |
114 | dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} |
115 | done |
116 | dosym refmac /usr/bin/refmac5 || die |
117 | } |