From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.6.1.ebuild bwa-0.5.8a.ebuild |
Date: | Wed, 30 Nov 2011 08:44:30 |
Message-Id: | 20111130084421.50CDA2004B@flycatcher.gentoo.org |
1 | weaver 11/11/30 08:44:21 |
2 | |
3 | Modified: ChangeLog |
4 | Added: bwa-0.6.1.ebuild |
5 | Removed: bwa-0.5.8a.ebuild |
6 | Log: |
7 | Version bump |
8 | |
9 | (Portage version: 2.2.0_alpha74/cvs/Linux x86_64) |
10 | |
11 | Revision Changes Path |
12 | 1.11 sci-biology/bwa/ChangeLog |
13 | |
14 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.11&view=markup |
15 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.11&content-type=text/plain |
16 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.10&r2=1.11 |
17 | |
18 | Index: ChangeLog |
19 | =================================================================== |
20 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v |
21 | retrieving revision 1.10 |
22 | retrieving revision 1.11 |
23 | diff -u -r1.10 -r1.11 |
24 | --- ChangeLog 1 May 2011 09:19:52 -0000 1.10 |
25 | +++ ChangeLog 30 Nov 2011 08:44:21 -0000 1.11 |
26 | @@ -1,6 +1,12 @@ |
27 | # ChangeLog for sci-biology/bwa |
28 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
29 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.10 2011/05/01 09:19:52 jlec Exp $ |
30 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.11 2011/11/30 08:44:21 weaver Exp $ |
31 | + |
32 | +*bwa-0.6.1 (30 Nov 2011) |
33 | + |
34 | + 30 Nov 2011; Andrey Kislyuk <weaver@g.o> -bwa-0.5.8a.ebuild, |
35 | + +bwa-0.6.1.ebuild: |
36 | + Version bump |
37 | |
38 | *bwa-0.5.9 (01 May 2011) |
39 | |
40 | |
41 | |
42 | |
43 | 1.1 sci-biology/bwa/bwa-0.6.1.ebuild |
44 | |
45 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.6.1.ebuild?rev=1.1&view=markup |
46 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.6.1.ebuild?rev=1.1&content-type=text/plain |
47 | |
48 | Index: bwa-0.6.1.ebuild |
49 | =================================================================== |
50 | # Copyright 1999-2011 Gentoo Foundation |
51 | # Distributed under the terms of the GNU General Public License v2 |
52 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.6.1.ebuild,v 1.1 2011/11/30 08:44:21 weaver Exp $ |
53 | |
54 | EAPI=2 |
55 | |
56 | inherit flag-o-matic toolchain-funcs |
57 | |
58 | DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" |
59 | HOMEPAGE="http://bio-bwa.sourceforge.net/" |
60 | SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2" |
61 | |
62 | LICENSE="GPL-3" |
63 | SLOT="0" |
64 | IUSE="" |
65 | KEYWORDS="~amd64 ~x86 ~x64-macos" |
66 | |
67 | src_prepare() { |
68 | sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \ |
69 | -i "${S}"/Makefile || die #336348 |
70 | append-flags -pthread |
71 | } |
72 | |
73 | src_compile() { |
74 | emake -e CC="$(tc-getCC)" || die |
75 | } |
76 | |
77 | src_install() { |
78 | dobin bwa || die |
79 | doman bwa.1 || die |
80 | exeinto /usr/share/${PN} |
81 | doexe solid2fastq.pl || die |
82 | doexe qualfa2fq.pl || die |
83 | dodoc ChangeLog NEWS || die |
84 | } |