[gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c.ebuild ChangeLog

[Jeffrey Gardner (je_fro)]

je_fro      08/06/22 19:30:33

  Modified:             qrna-2.0.3c.ebuild ChangeLog
  Log:
  Rely on squid from hmmer. Fixes bug #208462
  (Portage version: 2.2_rc1/cvs/Linux 2.6.25-gentoo-r5 x86_64)

Revision  Changes    Path
1.10                 sci-biology/qrna/qrna-2.0.3c.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild?r1=1.9&r2=1.10

Index: qrna-2.0.3c.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- qrna-2.0.3c.ebuild	22 May 2007 01:08:10 -0000	1.9
+++ qrna-2.0.3c.ebuild	22 Jun 2008 19:30:32 -0000	1.10
@@ -1,6 +1,6 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.9 2007/05/22 01:08:10 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.10 2008/06/22 19:30:32 je_fro Exp $
 
 inherit toolchain-funcs
 
@@ -10,22 +10,20 @@
 LICENSE="GPL-2"
 
 SLOT="0"
-KEYWORDS="amd64 ppc x86"
+KEYWORDS="amd64 ~ppc x86"
 IUSE=""
 
-DEPEND="dev-lang/perl"
+DEPEND="dev-lang/perl
+	sci-biology/hmmer"
 
 src_compile () {
 	sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
 		-e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
 		-i src/Makefile squid/Makefile
-	sed -e "s/CC     = gcc/CC = $(tc-getCC)/" \
-		-e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \
-		-i squid02/Makefile
+
 	cd "${S}"/squid
 	emake || die
-	cd "${S}"/squid02
-	emake || die
+
 	cd "${S}"/src
 	emake || die
 }
@@ -33,9 +31,7 @@
 src_install () {
 	cd "${S}"/src
 	dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle || die
-	cd "${S}"/squid02
-	dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \
-		sfetch shuffle sindex sreformat translate weight || die
+
 	cd "${S}"
 	dobin scripts/* || die
 



1.17                 sci-biology/qrna/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.17&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.17&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.16&r2=1.17

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -r1.16 -r1.17
--- ChangeLog	22 May 2007 01:08:10 -0000	1.16
+++ ChangeLog	22 Jun 2008 19:30:32 -0000	1.17
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/qrna
-# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.16 2007/05/22 01:08:10 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.17 2008/06/22 19:30:32 je_fro Exp $
+
+  22 Jun 2008; Jeff Gardner <je_fro@g.o> qrna-2.0.3c.ebuild:
+  No longer compiling files in squid02 because they are newer in hmmer and
+  we avoid collisions. qrna now depends on hmmer. See bug #208462.
 
   22 May 2007; Olivier Fisette <ribosome@g.o> qrna-2.0.3c.ebuild:
   Updated home page.



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