Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/MaSuRCA/
Date: Thu, 30 Apr 2015 21:16:54
Message-Id: 1430428580.fbb39ffdcd8232fb3e7346355f4d7b50eb429dc1.mmokrejs@gentoo
1 commit: fbb39ffdcd8232fb3e7346355f4d7b50eb429dc1
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Thu Apr 30 21:16:20 2015 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Thu Apr 30 21:16:20 2015 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fbb39ffd
7
8 sci-biology/MaSuRCA: version bump
9
10 Package-Manager: portage-2.2.18
11
12 sci-biology/MaSuRCA/ChangeLog | 8 ++++++-
13 ...{MaSuRCA-2.1.0.ebuild => MaSuRCA-2.3.2b.ebuild} | 26 +++++++++-------------
14 2 files changed, 17 insertions(+), 17 deletions(-)
15
16 diff --git a/sci-biology/MaSuRCA/ChangeLog b/sci-biology/MaSuRCA/ChangeLog
17 index e9d6a2c..4014eea 100644
18 --- a/sci-biology/MaSuRCA/ChangeLog
19 +++ b/sci-biology/MaSuRCA/ChangeLog
20 @@ -1,7 +1,13 @@
21 # ChangeLog for sci-biology/MaSuRCA
22 -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
23 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
24 # $Header: $
25
26 +*MaSuRCA-2.3.2b (30 Apr 2015)
27 +
28 + 30 Apr 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
29 + +MaSuRCA-2.3.2b.ebuild, -MaSuRCA-2.1.0.ebuild:
30 + sci-biology/MaSuRCA: version bump
31 +
32 16 Sep 2014; Christoph Junghans <ottxor@g.o> MaSuRCA-2.1.0.ebuild:
33 added license
34
35
36 diff --git a/sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
37 similarity index 67%
38 rename from sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild
39 rename to sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
40 index 04e8172..01eeeeb 100644
41 --- a/sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild
42 +++ b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
43 @@ -1,4 +1,4 @@
44 -# Copyright 1999-2014 Gentoo Foundation
45 +# Copyright 1999-2015 Gentoo Foundation
46 # Distributed under the terms of the GNU General Public License v2
47 # $Header: $
48
49 @@ -16,33 +16,27 @@ IUSE=""
50
51 DEPEND="dev-lang/perl
52 app-arch/bzip2"
53 -RDEPEND="${DEPEND}"
54 - #sci-biology/quorum"
55 +RDEPEND="${DEPEND}
56 + >=sci-biology/quorum-0.2.1
57 + >=sci-biology/jellyfish-1.1.11"
58
59 # the ebuild mimics "${S}"/install.sh
60 src_configure(){
61 - cd jellyfish-1.1.11 || die
62 + cd jellyfish || die
63 econf
64
65 - cd ../jellyfish-2.0.0rc1 || die
66 - econf --program-suffix=-2.0
67 -
68 cd ../CA/kmer || die
69 - sh ./configure.sh
70 econf
71
72 - cd ../../SuperReads-0.3.2 || die
73 + cd ../../SuperReads || die
74 econf
75
76 - cd ../quorum-0.3.2 || die
77 + cd ../quorum || die
78 econf --enable-relative-paths --with-relative-jf-path
79 }
80
81 src_compile(){
82 - cd jellyfish-1.1.11 || die
83 - emake
84 -
85 - cd ../jellyfish-2.0.0rc1 || die
86 + cd jellyfish || die
87 emake
88
89 cd ../CA/kmer || die
90 @@ -51,10 +45,10 @@ src_compile(){
91 cd ../../CA/src || die
92 emake
93
94 - cd ../SuperReads-0.3.2 || die
95 + cd ../SuperReads || die
96 emake
97
98 - cd ../quorum-0.3.2 || die
99 + cd ../quorum || die
100 emake
101 }