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commit: 3241a12426e95464547ee45cc6489df6fd8a4350 |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Thu Dec 6 15:33:03 2018 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Thu Dec 6 15:33:03 2018 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3241a124 |
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|
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sci-biology/RAILS: new package for (re-)scaffolding |
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|
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This is a successor of SSAKE and of LINKS scaffolders. |
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|
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Remove hardcoded PATHs, see |
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https://github.com/bcgsc/RAILS/issues/8#issuecomment-444898365 |
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|
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Package-Manager: Portage-2.3.52, Repoman-2.3.12 |
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Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> |
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|
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sci-biology/RAILS/RAILS-1.4.1.ebuild | 30 ++++++++++++++++++++++++++++++ |
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sci-biology/RAILS/metadata.xml | 12 ++++++++++++ |
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2 files changed, 42 insertions(+) |
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|
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diff --git a/sci-biology/RAILS/RAILS-1.4.1.ebuild b/sci-biology/RAILS/RAILS-1.4.1.ebuild |
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new file mode 100644 |
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index 000000000..9360c6040 |
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--- /dev/null |
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+++ b/sci-biology/RAILS/RAILS-1.4.1.ebuild |
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@@ -0,0 +1,30 @@ |
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+# Copyright 2018 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+DESCRIPTION="Cobbler and RAILS scaffolding tools" |
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+HOMEPAGE="https://github.com/bcgsc/RAILS" |
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+SRC_URI="https://github.com/bcgsc/RAILS/archive/v1.4.1.tar.gz -> ${P}.tar.gz" |
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+ |
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+LICENSE="GPL-3+" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND} |
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+ dev-lang/perl |
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+ sci-biology/samtools" |
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+BDEPEND="" |
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+ |
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+src_prepare(){ |
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+ # remove hardcoded PATHs |
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+ sed -e 's@^\.\./@@g' -e 's@^export PATH=/gsc/btl/linuxbrew@#&1@' -i bin/runRAILS.sh || die |
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+ default |
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+} |
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+ |
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+src_install(){ |
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+ dobin bin/* |
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+ dodoc readme.md paper/paper.pdf |
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+} |
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|
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diff --git a/sci-biology/RAILS/metadata.xml b/sci-biology/RAILS/metadata.xml |
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new file mode 100644 |
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index 000000000..138cb7705 |
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--- /dev/null |
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+++ b/sci-biology/RAILS/metadata.xml |
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@@ -0,0 +1,12 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <maintainer type="person"> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+ <maintainer type="project"> |
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+ <email>sci-biology@g.o</email> |
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+ <name>Gentoo Biology Project</name> |
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+ </maintainer> |
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+</pkgmetadata> |