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jlec 10/11/04 21:56:29 |
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|
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Modified: ChangeLog |
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Added: ccpn-2.1.5_p101104.ebuild |
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Log: |
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Version Bump |
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|
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(Portage version: 2.2.0_alpha3/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.44 sci-chemistry/ccpn/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?rev=1.44&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?rev=1.44&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ChangeLog?r1=1.43&r2=1.44 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v |
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retrieving revision 1.43 |
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retrieving revision 1.44 |
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diff -u -r1.43 -r1.44 |
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--- ChangeLog 24 Oct 2010 11:28:52 -0000 1.43 |
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+++ ChangeLog 4 Nov 2010 21:56:29 -0000 1.44 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for sci-chemistry/ccpn |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.43 2010/10/24 11:28:52 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.44 2010/11/04 21:56:29 jlec Exp $ |
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+ |
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+*ccpn-2.1.5_p101104 (04 Nov 2010) |
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+ |
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+ 04 Nov 2010; Justin Lecher <jlec@g.o> +ccpn-2.1.5_p101104.ebuild: |
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+ Version Bump |
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|
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*ccpn-2.1.5_p101024 (24 Oct 2010) |
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|
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|
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|
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|
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1.1 sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: ccpn-2.1.5_p101104.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p101104.ebuild,v 1.1 2010/11/04 21:56:29 jlec Exp $ |
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|
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EAPI="3" |
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|
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PYTHON_DEPEND="2:2.5" |
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SUPPORT_PYTHON_ABIS="1" |
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PYTHON_USE_WITH="ssl tk" |
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RESTRICT_PYTHON_ABIS="2.4 3.*" |
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|
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inherit eutils portability python toolchain-funcs versionator |
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|
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PATCHSET="${PV##*_p}" |
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MY_PN="${PN}mr" |
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MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})" |
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MY_MAJOR="$(get_version_component_range 1-3)" |
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|
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DESCRIPTION="The Collaborative Computing Project for NMR" |
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SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz" |
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[[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2" |
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HOMEPAGE="http://www.ccpn.ac.uk/ccpn" |
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|
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SLOT="0" |
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LICENSE="|| ( CCPN LGPL-2.1 )" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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IUSE="extendnmr +opengl" |
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|
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RDEPEND=" |
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dev-lang/tk[threads] |
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>=dev-python/numpy-1.4 |
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>=dev-tcltk/tix-8.4.3 |
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=sci-libs/ccpn-data-"${MY_MAJOR}"* |
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x11-libs/libXext |
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x11-libs/libX11 |
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extendnmr? ( |
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sci-chemistry/aria |
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sci-chemistry/prodecomp ) |
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opengl? ( |
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media-libs/freeglut |
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dev-python/pyglet )" |
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# We need to fix this |
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# sci-chemistry/mdd |
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DEPEND="${RDEPEND}" |
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|
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RESTRICT="mirror" |
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S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV}) |
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|
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src_prepare() { |
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[[ -n ${PATCHSET} ]] && \ |
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epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch |
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|
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epatch "${FILESDIR}"/${MY_PV}-parallel.patch |
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|
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local tk_ver |
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local myconf |
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|
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tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)" |
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|
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if use opengl; then |
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GLUT_NEED_INIT="-DNEED_GLUT_INIT" |
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IGNORE_GL_FLAG="" |
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GL_FLAG="-DUSE_GL_FALSE" |
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GL_DIR="${EPREFIX}/usr" |
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GL_LIB="-lglut -lGLU -lGL" |
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GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include" |
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GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)" |
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|
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else |
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IGNORE_GL_FLAG="-DIGNORE_GL" |
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GL_FLAG="-DUSE_GL_FALSE" |
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fi |
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|
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GLUT_NOT_IN_GL="" |
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GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)" |
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|
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rm -rf data model doc license || die |
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python_copy_sources |
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|
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preparation() { |
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sed \ |
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-e "s:/usr:${EPREFIX}/usr:g" \ |
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-e "s:^\(CC =\).*:\1 $(tc-getCC):g" \ |
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-e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \ |
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-e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \ |
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-e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \ |
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-e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \ |
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-e "s:^\(GL_DIR =\).*:\1 ${GL_DIR}:g" \ |
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-e "s:^\(GL_LIB =\).*:\1 ${GL_LIB}:g" \ |
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-e "s:^\(GL_LIB_FLAGS =\).*:\1 ${GL_LIB_FLAGS}:g" \ |
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-e "s:^\(GL_INCLUDE_FLAGS =\).*:\1 ${GL_INCLUDE_FLAGS}:g" \ |
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-e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \ |
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-e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \ |
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-e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ |
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-e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ |
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-e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \ |
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-e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \ |
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-e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \ |
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c/environment_default.txt > c/environment.txt |
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} |
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python_execute_function -s preparation |
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} |
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|
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src_compile() { |
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building() { |
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emake -C c all links |
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} |
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python_execute_function -s building |
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} |
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|
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src_install() { |
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local libdir |
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local tkver |
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local _wrapper |
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|
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find . -name "*.pyc" -type d -delete |
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|
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libdir=$(get_libdir) |
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tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) |
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|
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_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara" |
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use extendnmr && _wrapper="${_wrapper} extendNmr" |
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for wrapper in ${_wrapper}; do |
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sed \ |
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-e "s:gentoo_sitedir:${EPREFIX}$(python_get_sitedir -f):g" \ |
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-e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \ |
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-e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \ |
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-e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \ |
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-e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \ |
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-e "s://:/:g" \ |
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"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}" |
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dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}" |
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done |
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|
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installation() { |
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local in_path |
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local files |
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local pydocs |
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|
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pydocs="$(find python -name doc -type d)" |
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rm -rf ${pydocs} || die |
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|
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in_path=$(python_get_sitedir)/${PN} |
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|
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for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do |
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sed \ |
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-e 's:#from __future__:from __future__:g' \ |
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-i ${i} || die |
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done |
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|
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insinto ${in_path} |
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|
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dodir ${in_path}/c |
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|
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ebegin "Installing main files" |
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doins -r python || die "main files installation failed" |
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eend |
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|
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dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die |
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for i in ${pydocs}; do |
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dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i} |
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done |
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|
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dosym /usr/share/ccpn/data ${in_path}/data |
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dosym /usr/share/ccpn/model ${in_path}/model |
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|
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einfo "Adjusting permissions" |
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|
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files=" |
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cambridge/c/BayesPeakSeparator.so |
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ccp/c/StructUtil.so |
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ccp/c/StructStructure.so |
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ccp/c/StructBond.so |
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ccp/c/StructAtom.so |
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ccpnmr/c/DyAtomCoord.so |
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ccpnmr/c/DyDistConstraint.so |
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ccpnmr/c/DyDistForce.so |
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ccpnmr/c/AtomCoordList.so |
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ccpnmr/c/DyAtomCoordList.so |
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ccpnmr/c/ContourStyle.so |
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ccpnmr/c/ContourLevels.so |
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ccpnmr/c/SliceFile.so |
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ccpnmr/c/PeakCluster.so |
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ccpnmr/c/Dynamics.so |
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ccpnmr/c/Bacus.so |
| 233 |
ccpnmr/c/Midge.so |
| 234 |
ccpnmr/c/DyDistConstraintList.so |
| 235 |
ccpnmr/c/WinPeakList.so |
| 236 |
ccpnmr/c/PeakList.so |
| 237 |
ccpnmr/c/DistConstraint.so |
| 238 |
ccpnmr/c/CloudUtil.so |
| 239 |
ccpnmr/c/DistForce.so |
| 240 |
ccpnmr/c/DistConstraintList.so |
| 241 |
ccpnmr/c/AtomCoord.so |
| 242 |
ccpnmr/c/DyDynamics.so |
| 243 |
ccpnmr/c/ContourFile.so |
| 244 |
memops/c/ShapeFile.so |
| 245 |
memops/c/BlockFile.so |
| 246 |
memops/c/PdfHandler.so |
| 247 |
memops/c/MemCache.so |
| 248 |
memops/c/FitMethod.so |
| 249 |
memops/c/PsHandler.so |
| 250 |
memops/c/GlHandler.so |
| 251 |
memops/c/StoreFile.so |
| 252 |
memops/c/StoreHandler.so |
| 253 |
memops/c/TkHandler.so" |
| 254 |
|
| 255 |
for FILE in ${files}; do |
| 256 |
fperms 755 ${in_path}/python/${FILE} |
| 257 |
done |
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} |
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python_execute_function -s installation |
| 260 |
} |
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|
| 262 |
pkg_postinst() { |
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python_mod_optimize ${PN} |
| 264 |
} |
| 265 |
|
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pkg_postrm() { |
| 267 |
python_mod_cleanup ${PN} |
| 268 |
} |
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