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commit: 3d453585d191dca9ce0577865db62270bbcb1842 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Aug 2 14:49:41 2016 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Aug 2 14:49:41 2016 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3d453585 |
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|
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sci-biology/maker: add some comments to the ebuild |
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|
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Package-Manager: portage-2.3.0 |
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|
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sci-biology/maker/maker-2.31.8.ebuild | 9 ++++++++- |
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1 file changed, 8 insertions(+), 1 deletion(-) |
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|
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diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild |
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index 60abb3a..21734c2 100644 |
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--- a/sci-biology/maker/maker-2.31.8.ebuild |
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+++ b/sci-biology/maker/maker-2.31.8.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2016 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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@@ -95,6 +95,7 @@ pkg_nofetch() { |
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einfo "That in turn requires you to register at http://www.girinst.org/server/RepBase" |
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einfo "to obtain sci-biology/repeatmasker-libraries data file" |
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einfo "For execution through openmpi or mpich please read INSTALL file" |
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+ einfo "Customization typically go into maker_opts.ctl file" |
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} |
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|
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src_compile(){ |
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@@ -102,9 +103,15 @@ src_compile(){ |
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./Build install || die |
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} |
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|
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+# If you move it, then the executables won’t be able to locate dependencies in the …/maker/data, |
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+# …/maker/lib, and …/maker/perl directories. You should really either add the location of |
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+# …/maker/bin to you PATH environmental variable or at most soft link the executables somewhere |
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+# else using the ‘ln -s’ command. |
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src_install(){ |
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cd "${WORKDIR}"/maker || die |
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rm -f bin/fasta_tool # is part of sci-biology/GAL |
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+ # drop development related accessory script requiring Parallel/MPIcar.pm |
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+ find . -name mpi_evaluator | xargs rm || die |
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mv bin/compare bin/compare_gff3_to_chado # rename as agreed by upstream, will be in maker-3 as well |
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dobin bin/* |
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dodoc README INSTALL |
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