[gentoo-commits] gentoo-x86 commit in sci-biology/velvet: ChangeLog velvet-1.0.18.ebuild

[Andrey Kislyuk (weaver)]

weaver      11/02/03 02:40:47

  Modified:             ChangeLog
  Added:                velvet-1.0.18.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2_rc86/cvs/Linux x86_64)

Revision  Changes    Path
1.13                 sci-biology/velvet/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.13&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.13&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/ChangeLog?r1=1.12&r2=1.13

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -r1.12 -r1.13
--- ChangeLog	20 Jun 2010 18:06:38 -0000	1.12
+++ ChangeLog	3 Feb 2011 02:40:47 -0000	1.13
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/velvet
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.12 2010/06/20 18:06:38 xarthisius Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.13 2011/02/03 02:40:47 weaver Exp $
+
+*velvet-1.0.18 (03 Feb 2011)
+
+  03 Feb 2011; Andrey Kislyuk <weaver@g.o> +velvet-1.0.18.ebuild,
+  +files/velvet-1.0.18-gentoo.diff:
+  Version bump
 
   20 Jun 2010; Kacper Kowalik <xarthisius@g.o> -velvet-0.7.50.ebuild:
   Remove old



1.1                  sci-biology/velvet/velvet-1.0.18.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/velvet-1.0.18.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/velvet/velvet-1.0.18.ebuild?rev=1.1&content-type=text/plain

Index: velvet-1.0.18.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-1.0.18.ebuild,v 1.1 2011/02/03 02:40:47 weaver Exp $

EAPI="3"

inherit eutils toolchain-funcs flag-o-matic

MY_P=${PN}_${PV}

DESCRIPTION="A sequence assembler for very short reads"
HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/"
SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz"

LICENSE="GPL-2"
SLOT="0"
IUSE="-doc"
KEYWORDS="~amd64 ~x86"

DEPEND="doc? ( virtual/latex-base )"
RDEPEND=""

S="${WORKDIR}/${MY_P}"

src_prepare() {
	append-flags -O3 # as recommended by upstream
	filter-ldflags -Wl,--as-needed # sorry, no time to deal with this. patches welcome
	epatch "${FILESDIR}"/${P}-gentoo.diff
	use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die
}

src_compile() {
	tc-export CC
	MAKE_XOPTS=""
	if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi
	if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi
	emake -j1 $MAKE_XOPTS || die
	emake -j1 $MAKE_XOPTS color || die
}

src_install() {
	dobin velvet{g,h,g_de,h_de} || die
	insinto /usr/share/${PN}
	doins -r contrib || die
	dodoc Manual.pdf CREDITS.txt ChangeLog || die
}

pkg_postinst() {
	elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual,"
	elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your"
	elog "environment or /etc/make.conf, then re-emerge the package. For example:"
	elog "	VELVET_MAXKMERLENGTH=NN emerge [options] velvet"
}