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commit: 702ba2aaa8e9bff70c76a39c0e28c5934f63adcb |
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Author: Denis Dupeyron <calchan <AT> gentoo <DOT> org> |
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AuthorDate: Mon Jan 4 18:23:36 2016 +0000 |
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Commit: Denis Dupeyron <calchan <AT> gentoo <DOT> org> |
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CommitDate: Mon Jan 4 18:24:41 2016 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=702ba2aa |
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|
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dev-lang/R: bump to 3.2.3 |
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|
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dev-lang/R/Manifest | 1 + |
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dev-lang/R/R-3.2.3.ebuild | 206 ++++++++++++++++++++++++++++++++++++++++++++++ |
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2 files changed, 207 insertions(+) |
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|
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diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest |
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index a60e55e..95f848f 100644 |
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--- a/dev-lang/R/Manifest |
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+++ b/dev-lang/R/Manifest |
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@@ -1,2 +1,3 @@ |
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DIST R-20130129.bash_completion.bz2 4209 SHA256 487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512 910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5 WHIRLPOOL 2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc |
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DIST R-3.2.2.tar.gz 29772864 SHA256 9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512 71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138 WHIRLPOOL fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e |
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+DIST R-3.2.3.tar.gz 29816176 SHA256 b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1 SHA512 9d7294af860204f4d84e25eb503111c9607beedbc42f01de073c915945a6342c3e24e25a9cc038a2e58442036bee931975d93dc327081ed02afe5ffa365170ea WHIRLPOOL 31ecbaa5c4340e02551eefe17f7f2e9ae075778e7b568a2c477b9f31f1b9598380edb8cb53c713df6643d2cba62ea97c6f225490ade2fc8a9e2b4d88426c7883 |
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|
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diff --git a/dev-lang/R/R-3.2.3.ebuild b/dev-lang/R/R-3.2.3.ebuild |
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new file mode 100644 |
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index 0000000..c8227c9 |
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--- /dev/null |
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+++ b/dev-lang/R/R-3.2.3.ebuild |
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@@ -0,0 +1,206 @@ |
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+# Copyright 1999-2016 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=5 |
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+ |
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+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
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+ |
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+BCP=${PN}-20130129.bash_completion |
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+DESCRIPTION="Language and environment for statistical computing and graphics" |
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+HOMEPAGE="http://www.r-project.org/" |
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+SRC_URI=" |
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+ mirror://cran/src/base/R-3/${P}.tar.gz |
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+ https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2" |
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+ |
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+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
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+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
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+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
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+ |
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+CDEPEND=" |
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+ app-arch/bzip2:0= |
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+ app-arch/xz-utils:0= |
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+ app-text/ghostscript-gpl |
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+ >=dev-libs/libpcre-8.35:3= |
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+ virtual/blas:0 |
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+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
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+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) |
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+ icu? ( dev-libs/icu:= ) |
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+ jpeg? ( virtual/jpeg:0 ) |
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+ lapack? ( virtual/lapack:0 ) |
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+ perl? ( dev-lang/perl ) |
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+ png? ( media-libs/libpng:0= ) |
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+ readline? ( sys-libs/readline:0= ) |
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+ tiff? ( media-libs/tiff:0= ) |
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+ tk? ( dev-lang/tk:0= ) |
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+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
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+ |
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+DEPEND="${CDEPEND} |
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+ virtual/pkgconfig |
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+ doc? ( |
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+ virtual/latex-base |
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+ dev-texlive/texlive-fontsrecommended |
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+ )" |
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+ |
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+RDEPEND="${CDEPEND} |
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+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip] |
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+ java? ( >=virtual/jre-1.5 )" |
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+ |
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+RESTRICT="minimal? ( test )" |
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+ |
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+R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}" |
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+ |
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+pkg_setup() { |
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+ if use openmp; then |
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+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then |
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+ ewarn "OpenMP is not available in your current selected gcc" |
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+ die "need openmp capable gcc" |
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+ fi |
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+ FORTRAN_NEED_OPENMP=1 |
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+ fi |
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+ fortran-2_pkg_setup |
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+ filter-ldflags -Wl,-Bdirect -Bdirect |
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+ # avoid using existing R installation |
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+ unset R_HOME |
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+ # Temporary fix for bug #419761 |
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+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
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+ append-flags -fno-ipa-cp-clone |
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+ fi |
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+} |
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+ |
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+src_prepare() { |
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+ epatch \ |
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+ "${FILESDIR}"/${PN}-2.11.1-parallel.patch \ |
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+ "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \ |
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+ "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch |
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+ |
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+ # fix packages.html for doc (gentoo bug #205103) |
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+ sed -i \ |
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+ -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
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+ src/library/tools/R/Rd.R || die |
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+ |
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+ # fix Rscript path when installed (gentoo bug #221061) |
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+ sed -i \ |
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+ -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \ |
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+ src/unix/Makefile.in || die "sed unix Makefile failed" |
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+ |
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+ # fix HTML links to manual (gentoo bug #273957) |
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+ sed -i \ |
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+ -e 's:\.\./manual/:manual/:g' \ |
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+ $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
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+ |
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+ use lapack && \ |
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+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
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+ |
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+ if use X; then |
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+ export R_BROWSER="$(type -p xdg-open)" |
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+ export R_PDFVIEWER="$(type -p xdg-open)" |
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+ fi |
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+ use perl && \ |
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+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
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+ |
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+ # don't search /usr/local |
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+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
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+ # Fix for Darwin (OS X) |
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+ if use prefix; then |
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+ if [[ ${CHOST} == *-darwin* ]] ; then |
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+ sed -i \ |
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+ -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
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+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
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+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
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+ -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
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+ configure.ac || die |
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+ # sort of "undo" 2.14.1-rmath-shared.patch |
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+ sed -i \ |
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+ -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
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+ src/nmath/standalone/Makefile.in || die |
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+ else |
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+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
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+ fi |
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+ fi |
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+ AT_M4DIR=m4 eaclocal |
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+ eautoconf |
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+} |
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+ |
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+src_configure() { |
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+ # --with-system-tre \ |
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+ # tre is patched from upstream |
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+ econf \ |
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+ --enable-byte-compiled-packages \ |
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+ --enable-R-shlib \ |
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+ --disable-R-framework \ |
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+ --with-system-zlib \ |
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+ --with-system-bzlib \ |
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+ --with-system-pcre \ |
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+ --with-system-xz \ |
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+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
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+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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+ $(use_enable nls) \ |
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+ $(use_enable openmp) \ |
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+ $(use_enable profile R-profiling) \ |
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+ $(use_enable profile memory-profiling) \ |
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+ $(use_enable static-libs static) \ |
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+ $(use_enable static-libs R-static-lib) \ |
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+ $(use_with cairo) \ |
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+ $(use_with icu ICU) \ |
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+ $(use_with jpeg jpeglib) \ |
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+ $(use_with lapack) \ |
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+ $(use_with !minimal recommended-packages) \ |
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+ $(use_with png libpng) \ |
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+ $(use_with readline) \ |
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+ $(use_with tiff libtiff) \ |
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+ $(use_with tk tcltk) \ |
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+ $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \ |
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+ $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \ |
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+ $(use_with X x) |
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+} |
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+ |
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+src_compile() { |
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+ export VARTEXFONTS="${T}/fonts" |
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+ emake AR="$(tc-getAR)" |
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+ emake -C src/nmath/standalone \ |
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+ shared $(use static-libs && echo static) AR="$(tc-getAR)" |
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+ use doc && emake info pdf |
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+} |
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+ |
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+src_install() { |
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+ default |
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+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
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+ |
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+ if use doc; then |
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+ emake DESTDIR="${D}" install-info install-pdf |
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+ dosym ../manual /usr/share/doc/${PF}/html/manual |
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+ fi |
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+ |
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+ cat > 99R <<-EOF |
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+ LDPATH=${R_DIR}/lib |
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+ R_HOME=${R_DIR} |
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+ EOF |
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+ doenvd 99R |
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+ newbashcomp "${WORKDIR}"/${BCP} ${PN} |
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+ # The buildsystem has a different understanding of install_names than |
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+ # we require. Since it builds modules like shared objects (wrong), many |
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+ # objects (all modules) get an incorrect install_name. Fixing the build |
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+ # system here is not really trivial. |
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+ if [[ ${CHOST} == *-darwin* ]] ; then |
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+ local mod |
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+ pushd "${ED}"/usr/lib/R > /dev/null |
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+ for mod in $(find . -name "*.dylib") ; do |
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+ mod=${mod#./} |
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+ install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \ |
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+ "${mod}" |
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+ done |
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+ popd > /dev/null |
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+ fi |
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+ docompress -x /usr/share/doc/${PF}/NEWS.rds |
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+} |
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+ |
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+pkg_postinst() { |
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+ if use java; then |
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+ einfo "Re-initializing java paths for ${P}" |
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+ R CMD javareconf |
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+ fi |
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+} |
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