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commit: 92dde02e08880b42d92e542ca8f448bfdb89e98f |
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Author: André Erdmann <dywi <AT> mailerd <DOT> de> |
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AuthorDate: Tue Aug 27 16:07:23 2013 +0000 |
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Commit: André Erdmann <dywi <AT> mailerd <DOT> de> |
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CommitDate: Tue Aug 27 16:07:23 2013 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/R_overlay.git;a=commit;h=92dde02e |
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|
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add new "missing" dep rule file |
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|
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--- |
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config/simple-deprules.d/missing | 555 +++++++++++++++++++++++++++++++++++++++ |
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1 file changed, 555 insertions(+) |
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|
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diff --git a/config/simple-deprules.d/missing b/config/simple-deprules.d/missing |
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new file mode 100644 |
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index 0000000..f7ecf3e |
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--- /dev/null |
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+++ b/config/simple-deprules.d/missing |
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@@ -0,0 +1,555 @@ |
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+#! NOPARSE |
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+# ------------------------------------ |
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+# FORMAT |
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+# |
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+# <dependency string> |
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+# {<dependency string>} |
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+# {<upstream url>} |
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+# {[<notes>} |
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+# {package: <name> <version> from <repo> [-- optional|mandatory]} |
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+# {[<notes>} |
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+# |
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+# ------------------------------------ |
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+ |
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+<= 1.0.3(http://hadoop.apache.org/core/) or CDH3(http://www.cloudera.com) |
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+ package: hive 0.1.15 from CRAN |
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+ |
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+ABCtoolbox |
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+ http://www.cmpg.iee.unibe.ch/content/softwares__services/computer_programs/abctoolbox/index_eng.html |
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+ package: abctools 0.2 from CRAN |
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+ |
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+ADMB version 11 (http://admb-project.org/) foruse.admb=TRUE |
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+ http://admb-project.org/ |
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+ package: marked 1.0.9 from CRAN |
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+ package: marked 1.1.2 from CRAN |
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+ |
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+An ODBC3 driver manager |
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+ package: RODBC 1.3.6 from CRAN |
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+ package: RODBC 1.3.7 from CRAN |
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+ dev-db/unixODBC, dev-db/sqliteodbc, dev-db/myodbc, dev-db/psqlodbc, ...? |
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+ |
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+asreml |
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+asreml-R |
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+asreml-R 3.x |
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+ http://www.vsni.co.uk/software/asreml |
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+ package: dlmap 1.12 from CRAN |
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+ package: dlmap 1.13 from CRAN |
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+ package: mpMap 1.14 from CRAN |
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+ package: nadiv 2.8 from R-Forge |
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+ package: nadiv 2.9 from CRAN |
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+ package: nadiv 2.11 from CRAN |
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+ package: nadiv 2.12 from CRAN |
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+ package: wgaim 1.2 from CRAN |
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+ package: wgaim 1.3.0 from CRAN |
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+ package: wgaim 1.4.0 from CRAN |
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+ |
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+Bayescan 2.1. See README. |
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+ http://cmpg.unibe.ch/software/bayescan/ |
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+ package: AFLPsim 0.1.3 from CRAN |
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+ package: AFLPsim 0.1.4 from CRAN |
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+ |
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+bio3d |
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+ http://thegrantlab.org/bio3d/index.html |
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+ package: Rknots 1.2.1 from CRAN -- optional |
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+ |
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+boxshade |
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+ http://sourceforge.net/projects/boxshade/ |
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+ http://gpo.zugaina.org/sci-biology/boxshade-bin |
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+ package: BioTools 0.0.1 from R-Forge |
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+ |
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+calibayesR |
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+ package: basisR 0.1.5 from R-Forge -- optional |
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+ |
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+CnaStruct |
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+ package: jointSeg 0.3.11 from R-Forge -- optional |
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+ |
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+cudaMatrixOps |
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+ package: LargeRegression 1.0 from CRAN -- optional |
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+ |
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+Cytoscape (>= 2.8.0) (if used for visualization ofresults |
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+CytoscapeRPC plugin (>= 1.8) |
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+ http://www.cytoscape.org/download.html |
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+ * clicking "Proceed to Download" works even if nothing filled out |
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+ package: categoryCompare 1.0.0 |
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+ package: categoryCompare 1.0.2 |
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+ |
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+Debian or Ubuntu system with access to Goto Blas |
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+ needs to be checked whether virtual/blas would suffice |
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+ package: gcbd 0.2.4 from CRAN |
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+ |
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+DESeq2 (>= 1.0.17) |
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+ http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html |
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+ "in BIOC since 2.12" |
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+ package: metaRNASeq 0.3 from R-Forge |
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+ |
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+DSA |
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+ package: tmle 1.2.0.1 from CRAN -- optional |
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+ Theres a newer version available, tmle 1.2.0.3, which does no longer suggest |
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+ DSA. |
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+ |
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+fCalendar |
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+ package: FinTS 0.4.4 from R-Forge -- optional |
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+ fCalendar is available in CRAN-Archive |
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+ |
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+FEAR |
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+ http://www.clemson.edu/economics/faculty/wilson/software/fear/fear.html |
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+ seems to have its own license! |
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+ |
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+ 6. You are prohibited from the following activities, unless specifically permitted by OWNER: |
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+ [...] |
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+ ii. distributing, selling, sub-licensing, or otherwise making the software available for use by a third party; and |
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+ |
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+ package: Benchmarking 0.20 from CRAN -- optional |
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+ package: Benchmarking 0.21 from CRAN -- optional |
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+ package: Benchmarking 0.22 from CRAN -- optional |
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+ package: Benchmarking 0.23 from CRAN -- optional |
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+ |
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+Fedora: poppler-glib-devel] |
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+ app-text/poppler? |
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+ package: Rpoppler 0.0.0 from CRAN -- mandatory |
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+ package: Rpoppler 0.0.1 from CRAN -- mandatory |
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+ |
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+fUtilities |
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+ CRAN-Archive |
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+ package: FinTS 0.4.4 from R-Forge -- optional |
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+ |
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+GAPS-JAGS (==1.0.2) |
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+ *** TODO, cannot access upstream site currently *** |
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+ package: CoGAPS 1.6.0 |
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+ |
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+glcoxph |
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+ http://datamining.dongguk.ac.kr/Rlib/index.html |
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+ http://datamining.dongguk.ac.kr/Rlib/glcoxph/ |
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+ package: plsRcox 0.7.0 from CRAN -- optional |
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+ package: plsRcox 0.9 from CRAN -- optional |
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+ |
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+Hadoop core >= 0.19.1 |
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+Hadoop core >= 0.20.3(http://hadoop.apache.org/core/) |
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+ http://hadoop.apache.org/ |
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+ package: hive 0.1.15 from R-Forge -- mandatory |
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+ package: RHive 0.0.6 from CRAN -- mandatory |
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+ package: RHive 0.0.7 from CRAN -- mandatory |
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+ |
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+happy.hbrem |
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+ http://www.well.ox.ac.uk/happy/happyR.shtml |
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+ package: mpMap 1.14 from CRAN -- optional |
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+ |
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+Hive >= 0.8(http://hive.apache.org/) |
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+ http://hive.apache.org/ |
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+ package: RHive 0.0.6 from CRAN -- mandatory |
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+ package: RHive 0.0.7 from CRAN -- mandatory |
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+ |
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+IBGEPesq |
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+ *** TODO *** |
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+ package: dicionariosIBGE 1.1.1 from CRAN -- optional |
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+ |
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+IBM ILOG CPLEX (>= 12.1) |
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+ http://www-03.ibm.com/software/products/us/en/ibmilogcpleoptistud/ |
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+ $$ |
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+ package: cplexAPI 1.2.3 from CRAN -- mandatory |
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+ package: cplexAPI 1.2.2 from CRAN -- mandatory |
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+ package: cplexAPI 1.2.9 from CRAN -- mandatory |
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+ |
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+INLA |
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+ http://www.r-inla.org/download |
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+ package: abn 0.83 from CRAN |
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+ package: diseasemapping 0.6 from CRAN |
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+ package: diseasemapping 0.7 from R-Forge |
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+ package: inlaDevel 0.001 from R-Forge |
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+ package: lgcp 0.9.7 from CRAN |
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+ package: lgcp 1.3.2 from CRAN |
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+ |
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+Internal files Xba.CQV |
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+ nothing useful found. |
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+ package: RLMM 1.18.0 from BIOC -- mandatory |
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+ |
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+KEGGREST |
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+ http://bioconductor.org/packages/2.12/bioc/html/KEGGREST.html |
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+ "in BIOC since 2.12" |
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+ package: opm 0.10.22 from R-Forge |
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+ package: opm 0.10.32 from R-Forge |
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+ |
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+kinship |
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+kinship (>= 1.1.0-9) |
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+ CRAN-Archive |
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+ package: multic 0.3.2 -- optional |
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+ package: pbatR 2.2.9 from CRAN -- optional |
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+ |
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+Komodo Edit (http://www.openkomodo.com) |
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+ http://www.openkomodo.com/ |
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+ http://www.activestate.com/komodo-edit |
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+ package: svKomodo 0.9.58 from R-Forge -- mandatory |
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+ package: svKomodo 0.9.59 from CRAN -- mandatory |
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+ package: svKomodo 0.9.60 from R-Forge -- mandatory |
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+ |
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+kopls |
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+ http://kopls.sourceforge.net/ |
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+ package: Metabonomic 3.5 from CRAN |
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+ |
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+libapparmor-dev |
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+ sys-libs/libapparmor is available in hardened-dev |
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+ http://git.overlays.gentoo.org/gitweb/?p=proj/hardened-dev.git;a=summary |
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+ package: RAppArmor 0.8.3 from CRAN |
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+ !!! Older versions (0.5.0, 0.6.0) do not declare any apparmor dependency. |
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+ |
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+libraries(<http://poppler.freedesktop.org/>) [Debian/Ubuntu:libpoppler-glib-dev |
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+ see "Fedora: poppler-glib-devel]" // app-text/poppler? |
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+ |
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+libsbml (>=3.0.3) |
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+ http://sbml.org/Software/libSBML |
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+ http://sourceforge.net/projects/sbml/files/libsbml/ |
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+ package: rsbml 2.14.4 -- mandatory |
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+ |
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+LINDO API 8.0 |
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+ http://www.lindo.com/index.php?option=com_content&view=article&id=1.. |
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+ package: rLindo 8.0.1 from CRAN -- mandatory |
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+ |
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+lodplot |
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+ CRAN-Archive |
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+ package: quantsmooth 1.22.0 -- mandatory |
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+ |
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+MAGMA library |
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+MAGMA shared libraries (== release 0.2) |
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+MAGMA shared libraries (== release 1.3.0) |
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+ http://icl.cs.utk.edu/magma/ |
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+ http://icl.cs.utk.edu/magma/software/index.html |
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+ package: HiPLARM 0.1 from CRAN |
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+ package: magma 0.2.2.1 from CRAN |
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+ package: magma 1.3.0.2 from CRAN |
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+ |
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+mark.exe (>= 6.2) (or mark32.exe andmark64.exe) |
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+ name implies windows-only |
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+ upstream site http://www.phidot.org/software/mark/download/ is dead. |
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+ package: RMark 2.1.3 from CRAN -- mandatory |
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+ package: RMark 2.1.5 from CRAN -- mandatory |
244 |
+ package: RMark 2.1.6.1 from CRAN -- mandatory |
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+ |
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+MERLIN fromurl{www.sph.umich.edu/csg/abecasis/merlin} must be installedand pointed to in the PATH environment variable. |
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+ www.sph.umich.edu/csg/abecasis/merlin |
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+ http://www.sph.umich.edu/csg/abecasis/merlin/download/ |
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+ packages: paramlink * from CRAN |
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+ |
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+MonetDB installation |
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+ http://www.monetdb.org/ |
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+ http://dev.monetdb.org/downloads/sources/Latest/ |
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+ package: MonetDB_R 0.7.9 from R-Forge |
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+ package: MonetDB_R 0.7.5 from R-Forge |
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+ package: MonetDB_R 0.7.10 from R-Forge |
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+ package: MonetDB_R 0.7.3 from R-Forge |
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+ package: MonetDB_R 0.7.4 from R-Forge |
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+ package: MonetDB_R 0.7.8 from R-Forge |
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+ package: MonetDB_R 0.7 from R-Forge |
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+ |
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+MOSEK |
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+MOSEK (http://www.mosek.com) |
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+MOSEK License |
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+MOSEK License foruse of Rmosek. |
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+MOSEK Optimization Software |
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+ package: REBayes 0.40 from CRAN |
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+ package: Rmosek 1.2.3 from CRAN |
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+ package: Rmosek 1.2.5 from R-Forge |
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+ package: REBayes 0.32 from CRAN |
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+ package: Rmosek 1.2.4 from CRAN |
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+ |
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+notepad.exe |
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+ explicit windows dependency (->mark.exe, ...) |
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+ package: RMark 2.1.3 from CRAN |
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+ package: RMark 2.1.5 from CRAN |
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+ package: RMark 2.1.6.1 from CRAN |
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+ |
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+NW RFC SDK downloaded |
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+ SAP software? |
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+ package: RSAP 0.9 from CRAN |
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+ |
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+OpenBugs |
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+OpenBUGS (>= 3.2.2) |
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+OpenBUGS (>=3.2.2) |
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+OpenBUGS (http://www.openbugs.info/w/Downloads) |
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+ http://www.openbugs.info/w/ |
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+ http://www.openbugs.info/w/Downloads |
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+ package: BTSPAS 2012.0217 from CRAN |
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+ package: rbugs 0.5.9 from CRAN |
291 |
+ package: rbugs 0.5.6 from CRAN |
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+ package: BTSPAS 2012.0219 from CRAN |
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+ package: R2OpenBUGS 3.2.2.2 from CRAN |
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+ package: BRugs 0.8.3 from CRAN |
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+ package: R2OpenBUGS 3.2.2.1 from CRAN |
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+ package: BRugs 0.8.1 from CRAN |
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+ package: BRugs 0.8.0 from CRAN |
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+ package: rriskBayes 2.3 from CRAN |
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+ package: rriskBayes 2.2 from CRAN |
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+ |
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+OpenMx |
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+ http://openmx.psyc.virginia.edu/ |
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+ http://gitorious.org/openmx/openmx.git |
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+ package: MBESS 3.3.2 from CRAN |
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+ package: simsem 0.5.3 from CRAN |
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+ package: MBESS 3.3.3 from CRAN |
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+ package: semTools 0.4.0 from CRAN |
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+ |
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+OPIOctopus900 |
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+ http://people.eng.unimelb.edu.au/aturpin/opi/octo900.html |
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+ package: OPI 1.2 from R-Forge -- optional |
312 |
+ package: OPI 1.2.2 from R-Forge -- optional |
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+ package: OPI 1.6 from R-Forge -- optional |
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+ package: OPI 1.2.1 from R-Forge -- optional |
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+ package: OPI 1.5 from R-Forge -- optional |
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+ package: OPI 1.4 from CRAN -- optional |
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+ package: OPI 1.1 from CRAN -- optional |
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+ |
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+optionally qacct) |
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+ http://en.wikipedia.org/wiki/Sun_Grid_Engine |
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+ http://www.oracle.com/technetwork/oem/grid-engine-166852.html |
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+ package: Rsge 0.6.3 from CRAN |
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+ |
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+Oracle client |
325 |
+ dev-db/oracle-instantclient-basic? |
326 |
+ package: ora 2.0.0 from CRAN |
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+ |
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+Oracle Instant Client or Oracle Database Client |
329 |
+ dev-db/oracle-instantclient-basic? |
330 |
+ package: ROracle 1.1.10 from CRAN |
331 |
+ package: ROracle 1.1.3 from CRAN |
332 |
+ package: ROracle 1.1.5 from CRAN |
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+ |
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+pdf2 |
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+ http://r-forge.r-project.org/projects/pdf2/ |
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+ https://r-forge.r-project.org/R/?group_id=193 |
337 |
+ R-Forge: "failed to build" |
338 |
+ package: SGP 0.9.9.0 from CRAN |
339 |
+ |
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+PLASMA library |
341 |
+ kde-base/plasma-runtime? |
342 |
+ kde-base/libplasmagenericshell? |
343 |
+ package: HiPLARM 0.1 from CRAN |
344 |
+ |
345 |
+ply2ascii(http://sourceforge.net/projects/morpho-rpackage/files/Auxiliaries/) |
346 |
+ ? |
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+ |
348 |
+polynomial |
349 |
+ built-in "poly"? |
350 |
+ package list not correct due to false positives |
351 |
+ package: sqlsurvey 0.6.7 from R-Forge |
352 |
+ package: glmBfp 0.0.26 from R-Forge |
353 |
+ package: lava_nlin 0.2.4 from R-Forge |
354 |
+ package: glmBfp 0.0.35 from R-Forge |
355 |
+ package: smoothtest 2.0.3 from R-Forge |
356 |
+ package: sqlsurvey 0.4.2 from R-Forge |
357 |
+ package: nFDR 0.0.1 from CRAN |
358 |
+ package: epr 1.0 from CRAN |
359 |
+ package: polspline 1.1.5 from CRAN |
360 |
+ package: CompetingRiskFrailty 2.0 |
361 |
+ package: ptw 1.0.5 from CRAN |
362 |
+ package: simPH 0.7.2 from CRAN |
363 |
+ package: multipol 1.0.6 from CRAN |
364 |
+ package: polspline 1.1.8 from CRAN |
365 |
+ package: polydect 0.1.2 from CRAN |
366 |
+ package: lpint 1.0 from CRAN |
367 |
+ package: gaussquad 1.0.1 from CRAN |
368 |
+ package: quantchem 0.13 from CRAN |
369 |
+ package: PoMoS 1.1.1 from CRAN |
370 |
+ package: orthopolynom 1.0.5 from CRAN |
371 |
+ package: locpol 0.4.0 from CRAN |
372 |
+ package: mfp 1.4.9 from CRAN |
373 |
+ package: NonpModelCheck 1.0 from CRAN |
374 |
+ package: polynom 1.3.6 from CRAN |
375 |
+ package: locpol 0.5.0 from CRAN |
376 |
+ package: nsga2R 1.0 from CRAN |
377 |
+ package: mirt 0.8.0 from CRAN |
378 |
+ package: locpol 0.6.0 from CRAN |
379 |
+ package: gptk 1.05 from CRAN |
380 |
+ package: ptw 1.0.4 from CRAN |
381 |
+ package: mirt 0.2.6 from CRAN |
382 |
+ package: orthopolynom 1.0.3 from CRAN |
383 |
+ package: gaussquad 1.0.2 from CRAN |
384 |
+ package: PolynomF 0.94 from CRAN |
385 |
+ package: mpoly 0.0.3 from CRAN |
386 |
+ package: multipol 1.0.5 from CRAN |
387 |
+ package: MonoPoly 0.2.7 from CRAN |
388 |
+ package: EQL 1.0.0 from CRAN |
389 |
+ package: BayesNI 0.1 from CRAN |
390 |
+ package: bfp 0.0.25 from R-Forge |
391 |
+ package: TwoWaySurvival 2.2 |
392 |
+ package: Lmoments 1.1.5 from CRAN |
393 |
+ package: DPpackage 1.1.5 from CRAN |
394 |
+ package: epr 2.0 from CRAN |
395 |
+ package: DPpackage 1.1.6 from CRAN |
396 |
+ package: RSA 0.7.1 from CRAN |
397 |
+ package: mirt 0.4.0 from CRAN |
398 |
+ package: marelac 2.1.2 from R-Forge |
399 |
+ package: bdynsys 1.0 from CRAN |
400 |
+ package: quantchem 0.12.1 from CRAN |
401 |
+ package: boolfun 0.2.7 from CRAN |
402 |
+ package: gptk 1.06 from CRAN |
403 |
+ package: genlasso 1.0 from CRAN |
404 |
+ package: boolfun 0.2.8 from CRAN |
405 |
+ package: tmg 0.1 from CRAN |
406 |
+ package: wombsoft 2.0 from CRAN |
407 |
+ package: mpoly 0.0.1 from CRAN |
408 |
+ package: ptw 1.0.3 from CRAN |
409 |
+ package: widenet 0.1.2 from CRAN |
410 |
+ |
411 |
+Poppler Glib interface headers |
412 |
+ app-text/poppler? |
413 |
+ package: Rpoppler 0.0.1 from CRAN |
414 |
+ package: Rpoppler 0.0.0 from CRAN |
415 |
+ |
416 |
+PostgreSQL JDBCdriver |
417 |
+ dev-java/jdbc-postgresql? |
418 |
+ |
419 |
+Protocol Buffer compiler (to create C++ header andsource files from .proto descriptions) |
420 |
+ ? |
421 |
+ |
422 |
+qsarr |
423 |
+ https://r-forge.r-project.org/projects/qsarr/ |
424 |
+ R-Forge: "failed to build" |
425 |
+ package: qsarm 1.1 from R-Forge |
426 |
+ |
427 |
+qstat |
428 |
+ http://en.wikipedia.org/wiki/Sun_Grid_Engine |
429 |
+ http://www.oracle.com/technetwork/oem/grid-engine-166852.html |
430 |
+ or CAN BE RESOLVED: games-util/qstat? |
431 |
+ package: IsoGeneGUI 1.11.0 from R-Forge |
432 |
+ package: IsoGeneGUI 1.12.0 |
433 |
+ package: Rsge 0.6.3 from CRAN |
434 |
+ |
435 |
+R-Forge build/check environment(http://R-Forge.R-project.org) |
436 |
+ ? |
437 |
+ package: RForgeTools 0.4.13 |
438 |
+ package: rfTools 0.5.8.0 |
439 |
+ package: rfTools 0.5.8.2 |
440 |
+ package: rfTools 0.5.8.5 |
441 |
+ package: rfTools 0.5.8.6 |
442 |
+ |
443 |
+rayproject |
444 |
+ http://sourceforge.net/projects/morpho-rpackage/files/Auxiliaries/sources/ |
445 |
+ package: Morpho 0.24.1 from CRAN |
446 |
+ package: Morpho 0.25 from CRAN |
447 |
+ package: Morpho 0.25.1 from CRAN |
448 |
+ |
449 |
+RdbiPgSQL |
450 |
+ in BIOC 1.6, 1.7 |
451 |
+ package: RForgeTools 0.4.13 from R-Forge -- optional |
452 |
+ |
453 |
+rdp-classifier |
454 |
+ http://sourceforge.net/projects/rdp-classifier/? |
455 |
+ package: BioTools 0.0.1 from R-Forge -- mandatory |
456 |
+ |
457 |
+rel_32.exe (see README.txt) |
458 |
+ windows only |
459 |
+ package: RMark 2.1.3 from CRAN |
460 |
+ package: RMark 2.1.5 from CRAN |
461 |
+ package: RMark 2.1.6.1 from CRAN |
462 |
+ |
463 |
+Requires SGE (qsub |
464 |
+ http://en.wikipedia.org/wiki/Sun_Grid_Engine |
465 |
+ http://www.oracle.com/technetwork/oem/grid-engine-166852.html |
466 |
+ package: Rsge 0.6.3 from CRAN |
467 |
+ |
468 |
+retistruct (>= 0.4.10) |
469 |
+retistruct (>= 0.5.7) |
470 |
+ https://r-forge.r-project.org/R/?group_id=1436 |
471 |
+ "failed to build" |
472 |
+ package: retistructgui 0.5.8 from R-Forge |
473 |
+ package: retistructdemos 0.5.8 from R-Forge |
474 |
+ |
475 |
+revoIPC(>= 1.0-1) |
476 |
+ CRAN Archive |
477 |
+ package: doSMP 1.0.3 from R-Forge |
478 |
+ |
479 |
+Rlsf |
480 |
+ CRAN Archive |
481 |
+ package: MSToolkit 3.0.3 from R-Forge |
482 |
+ package: MSToolkit 2.0 from CRAN |
483 |
+ |
484 |
+RNMImport |
485 |
+ ? |
486 |
+ package: MSToolkit 3.2.1 from R-Forge -- optional |
487 |
+ package: MSToolkit 3.0.3 from R-Forge -- optional |
488 |
+ package: MSToolkit 3.2.0 from R-Forge -- optional |
489 |
+ |
490 |
+rpvm |
491 |
+ CRAN Archive |
492 |
+ package: snow 0.3.10 from CRAN |
493 |
+ package: snow 0.3.12 from CRAN |
494 |
+ package: snowFT 1.2.0 from CRAN |
495 |
+ package: varSelRF 0.7.3 from CRAN |
496 |
+ package: race 0.1.59 from CRAN |
497 |
+ |
498 |
+rtreebase |
499 |
+ treebase from CRAN? |
500 |
+ package: PhyloOrchard 0.1 from R-Forge |
501 |
+ |
502 |
+SAGA GIS (2.0.4 - 2.0.8) |
503 |
+SAGA GIS (2.0.4 - 2.1.0) |
504 |
+ http://www.saga-gis.org/en/index.html |
505 |
+ http://sourceforge.net/projects/saga-gis/ |
506 |
+ package: RSAGA 0.93.2.1 from CRAN |
507 |
+ package: RSAGA 0.93.1 from CRAN |
508 |
+ package: RSAGA 0.93.6 from CRAN |
509 |
+ |
510 |
+SciViews-K(http://www.sciviews.org/SciViews-K) |
511 |
+ http://www.sciviews.org/SciViews-K/ |
512 |
+ package: svKomodo 0.9.58 |
513 |
+ package: svKomodo 0.9.59 |
514 |
+ package: svKomodo 0.9.60 |
515 |
+ |
516 |
+The standalone program xgobi must be installedadditionally |
517 |
+xgobi must be installed additionally |
518 |
+ http://www2.research.att.com/areas/stat/xgobi/ |
519 |
+ package: xgobi 1.2.14 |
520 |
+ package: xgobi 1.2.15 |
521 |
+ |
522 |
+TODO!!! |
523 |
+ cannot be resolved. |
524 |
+ package: svDialogs 0.9.53 from R-Forge |
525 |
+ package: svDialogs 0.9.52 from CRAN |
526 |
+ package: svDialogs 0.9.54 from R-Forge |
527 |
+ |
528 |
+traceR |
529 |
+ ? |
530 |
+ nlmeU 0.70.3 does no longer suggest this package |
531 |
+ package: nlmeU 0.60.14 from R-Forge -- optional |
532 |
+ |
533 |
+trimesh_project |
534 |
+ http://sourceforge.net/projects/morpho-rpackage/files/Auxiliaries/sources/ ? |
535 |
+ package: Morpho 0.24.1 from CRAN |
536 |
+ package: Morpho 0.25 from CRAN |
537 |
+ package: Morpho 0.25.1 from CRAN |
538 |
+ |
539 |
+twMisc |
540 |
+ R-Forge, failed to build |
541 |
+ package: twMiscRgl 0.5.1 from R-Forge |
542 |
+ package: twSnowfall 0.8.81 from R-Forge |
543 |
+ |
544 |
+Ubigraph (http://ubietylab.net/ubigraph/index.html) |
545 |
+ http://ubietylab.net/ubigraph/index.html |
546 |
+ package: RUbigraph 0.1.1 -- mandatory |
547 |
+ |
548 |
+WinBUGS (>= 1.4) |
549 |
+WinBUGS 1.4 |
550 |
+ http://www.mrc-bsu.cam.ac.uk/bugs/winbugs/contents.shtml |
551 |
+ seems to be windows-only |
552 |
+ TOOD: check if the listed packages "really" need WinBUGS |
553 |
+ package: dclone 2.0.0 from R-Forge |
554 |
+ package: JMbayes 0.4.1 from CRAN |
555 |
+ package: dclone 1.8.1 from R-Forge |
556 |
+ package: dclone 1.8.0 from R-Forge |
557 |
+ package: JMbayes 0.2.0 from CRAN |
558 |
+ package: R2WinBUGS 2.1.19 from CRAN |
559 |
+ package: R2WinBUGS 2.1.18 from CRAN |
560 |
+ |
561 |
+WNdb-3.0.tar.gz fromwordnet.princeton.edu |
562 |
+ http://wordnet.princeton.edu/wordnet/download/current-version/ |
563 |
+ http://wordnetcode.princeton.edu/3.0/WNdb-3.0.tar.gz |
564 |
+ package: wordnet 0.1.9 |
565 |
+ package: wordnet 0.1.8 |
566 |
+ |
567 |
+Xba.regions (or otherregions file) |
568 |
+ *** see "Internal files Xba.CQV" above // nothing found *** |
569 |
+ |
570 |
+ypaddon |
571 |
+ https://bitbucket.org/remkoduursma/ypaddon |
572 |
+ https://bitbucket.org/remkoduursma/ypaddon/downloads |
573 |
+ package: YplantQMC 0.5 from CRAN |
574 |
+ package: YplantQMC 0.5.2 from R-Forge |