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commit: 3596083589625a3c954deccfdfb899b49a53a131 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Sat Feb 19 11:43:23 2022 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Sat Feb 19 11:43:23 2022 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=35960835 |
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|
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sci-biology/STAR: add version 2.7.10a |
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|
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Closes: https://bugs.gentoo.org/696714 |
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Bug: https://bugs.gentoo.org/741152 |
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Bug: https://bugs.gentoo.org/736056 |
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Bug: https://bugs.gentoo.org/716300 |
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Package-Manager: Portage-3.0.30, Repoman-3.0.3 |
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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sci-biology/STAR/Manifest | 1 + |
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sci-biology/STAR/STAR-2.7.10a.ebuild | 41 ++++++++++++++++++++++++++++++++++++ |
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2 files changed, 42 insertions(+) |
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|
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diff --git a/sci-biology/STAR/Manifest b/sci-biology/STAR/Manifest |
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index 35d580101e14..d8457898903d 100644 |
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--- a/sci-biology/STAR/Manifest |
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+++ b/sci-biology/STAR/Manifest |
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@@ -1 +1,2 @@ |
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DIST STAR-2.5.3a.tar.gz 9857460 BLAKE2B 32cc633862e6e81f5a5bdfc59986dca74e8adc4970a11a06c501065c5ad9cb37fc788f8e67ab2353292e683c8c385778cd0ffee69c0b15803796dbc445013a43 SHA512 8bd86ad384f2c0331fd701873b02641301f4205a5ff0fceeb800d425da42c53b6c61a74500d37fee7fc13a5bff10e1fb44b9142811883b8f5cd012f51f1f9fdf |
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+DIST STAR-2.7.10a.tar.gz 12270915 BLAKE2B 51a9cf2c838cfeb313df9e5024b53cd5a89088f08ac88c8dc57a9e08cd3ba394e46ffe86a8ff3b9484b25b681ecd960098c06d879e772d21afe8cc2d0d35175d SHA512 19a5f3c25d147bcd96cf68249d275dad7fd11425031a40c97c7ae15846f55839ced897d541ed60b426a6bf089d968ac86625af774db3950dc459035ac2b659c9 |
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|
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diff --git a/sci-biology/STAR/STAR-2.7.10a.ebuild b/sci-biology/STAR/STAR-2.7.10a.ebuild |
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new file mode 100644 |
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index 000000000000..6b1c5b15d482 |
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--- /dev/null |
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+++ b/sci-biology/STAR/STAR-2.7.10a.ebuild |
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@@ -0,0 +1,41 @@ |
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+# Copyright 1999-2022 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=8 |
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+ |
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+inherit toolchain-funcs |
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+ |
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+DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" |
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+HOMEPAGE="https://github.com/alexdobin/STAR" |
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+SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" |
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+ |
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+LICENSE="GPL-3" |
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+SLOT="0" |
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+KEYWORDS="~amd64" |
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+ |
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+RDEPEND="sci-libs/htslib:=" |
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+DEPEND="${RDEPEND}" |
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+BDEPEND="virtual/pkgconfig" |
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+ |
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+DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf ) |
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+ |
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+pkg_pretend() { |
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+ [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp |
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+} |
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+ |
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+pkg_setup() { |
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+ [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp |
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+} |
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+ |
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+src_configure() { |
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+ tc-export CC CXX PKG_CONFIG |
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+} |
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+ |
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+src_compile() { |
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+ emake -C source STAR |
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+} |
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+ |
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+src_install() { |
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+ dobin source/STAR |
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+ einstalldocs |
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+} |