[gentoo-commits] proj/sci:master commit in: sci-biology/barrnap/

[Horea Christian]

commit:     048c61f03abe33efb441bb6aa06514e10e7629de
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 07:56:32 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 07:56:32 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=048c61f0

sci-biology/barrnap: version bump 0.9

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/barrnap/barrnap-0.3.ebuild             | 40 ----------------------
 .../{barrnap-0.4.ebuild => barrnap-0.9.ebuild}     |  8 ++---
 2 files changed, 4 insertions(+), 44 deletions(-)

diff --git a/sci-biology/barrnap/barrnap-0.3.ebuild b/sci-biology/barrnap/barrnap-0.3.ebuild
deleted file mode 100644
index be281351f..000000000
--- a/sci-biology/barrnap/barrnap-0.3.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit perl-module
-
-DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format"
-HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml"
-SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# contains bundled binaries of hmmer-3.1 (dev version)
-# needs >=perl-5.6
-
-DEPEND=""
-RDEPEND="${DEPEND}
-	dev-lang/perl:=
-	sci-biology/nesoni"
-
-src_install(){
-	# the below recreates the whole layout
-	insinto /usr/share/"${PN}"
-	doins barrnap
-	chmod a+rx "${ED}"/usr/share/"${PN}"/barrnap
-	insinto /usr/share/"${PN}"/binaries
-	doins binaries/nhmmer.linux
-	chmod a+rx "${ED}"/usr/share/"${PN}"/binaries/nhmmer.linux
-	insinto /usr/share/"${PN}"/db
-	doins db/*
-	insinto /usr/share/examples
-	doins examples/*
-
-	echo PATH=/usr/share/"${PN}":$PATH > "${S}"/99barrnap
-	doenvd "${S}"/99barrnap
-}

diff --git a/sci-biology/barrnap/barrnap-0.4.ebuild b/sci-biology/barrnap/barrnap-0.9.ebuild
similarity index 87%
rename from sci-biology/barrnap/barrnap-0.4.ebuild
rename to sci-biology/barrnap/barrnap-0.9.ebuild
index f4559fddc..e60736e57 100644
--- a/sci-biology/barrnap/barrnap-0.4.ebuild
+++ b/sci-biology/barrnap/barrnap-0.9.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 inherit perl-module
 
 DESCRIPTION="Predict Bacterial and Archaeal rRNA genes and output in GFF3 format"
 HOMEPAGE="http://www.vicbioinformatics.com/software.barrnap.shtml"
-SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"
+SRC_URI="https://github.com/tseemann/barrnap/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="GPL-3"
 SLOT="0"
@@ -20,7 +20,7 @@ IUSE=""
 DEPEND=""
 RDEPEND="${DEPEND}
 	dev-lang/perl:=
-	sci-biology/nesoni"
+	"
 
 src_install(){
 	# the below recreates the whole layout