Gentoo Archives: gentoo-commits

From: Marius Brehler <marbre@××××××××××××××.de>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/Atlas2/
Date: Fri, 25 Dec 2015 21:18:32
Message-Id: 1451078289.8223dfff412cfb14e0589ddf6183ed84d9c20a76.marbre@gentoo
1 commit: 8223dfff412cfb14e0589ddf6183ed84d9c20a76
2 Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
3 AuthorDate: Fri Dec 25 21:18:09 2015 +0000
4 Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
5 CommitDate: Fri Dec 25 21:18:09 2015 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8223dfff
7
8 sci-biology/Atlas2: Drop ruby19, shorten description, add missing dies
9
10 Package-Manager: portage-2.2.24
11
12 sci-biology/Atlas2/Atlas2-1.4.3.ebuild | 10 +++++-----
13 sci-biology/Atlas2/ChangeLog | 3 +++
14 2 files changed, 8 insertions(+), 5 deletions(-)
15
16 diff --git a/sci-biology/Atlas2/Atlas2-1.4.3.ebuild b/sci-biology/Atlas2/Atlas2-1.4.3.ebuild
17 index 4e27e89..6b82ca4 100644
18 --- a/sci-biology/Atlas2/Atlas2-1.4.3.ebuild
19 +++ b/sci-biology/Atlas2/Atlas2-1.4.3.ebuild
20 @@ -4,11 +4,11 @@
21
22 EAPI=5
23
24 -USE_RUBY="ruby19 ruby20"
25 +USE_RUBY="ruby20"
26
27 inherit ruby-fakegem
28
29 -DESCRIPTION="Variant analysis tools (true SNPs, insertions, deletions) from whole exome capture sequencing (WECS)"
30 +DESCRIPTION="Variant analysis tools from whole exome capture sequencing (WECS)"
31 HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas2"
32 SRC_URI="http://downloads.sourceforge.net/project/atlas2/Atlas2_v1.4.3.zip"
33
34 @@ -30,12 +30,12 @@ src_compile(){
35 cd SOLiD-SNP-caller || die
36 default
37
38 - cd ../vcfPrinter
39 + cd ../vcfPrinter || die
40 # TODO: install the *.rb files
41
42 - cd ../Atlas-Indel2
43 + cd ../Atlas-Indel2 || die
44 # TODO: install the *.rb and files in lib/
45
46 - cd ../Atlas-SNP2
47 + cd ../Atlas-SNP2 || die
48 # TODO: install
49 }
50
51 diff --git a/sci-biology/Atlas2/ChangeLog b/sci-biology/Atlas2/ChangeLog
52 index f6b72a7..834464d 100644
53 --- a/sci-biology/Atlas2/ChangeLog
54 +++ b/sci-biology/Atlas2/ChangeLog
55 @@ -2,6 +2,9 @@
56 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
57 # $Id$
58
59 + 25 Dec 2015; Marius Brehler <marbre@××××××××××××××.de> Atlas2-1.4.3.ebuild:
60 + sci-biology/Atlas2: Drop ruby19, shorten description, add missing dies
61 +
62 25 Dec 2015; Marius Brehler <marbre@××××××××××××××.de> metadata.xml:
63 sci-biology/Atlas2: Add longdescription