[gentoo-commits] gentoo-x86 commit in sci-chemistry/molrep: metadata.xml ChangeLog molrep-10.2.35.ebuild

[Justin Lecher (jlec)]

jlec        10/02/06 00:45:51

  Added:                metadata.xml ChangeLog molrep-10.2.35.ebuild
  Log:
  Another splitted app from ccp4
  (Portage version: 2.2_rc62/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-chemistry/molrep/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/molrep/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/molrep/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
  <email>sci@g.o</email>
</maintainer>
<use>
	<flag name='extra-test'>Extra long tests</flag>
</use>
</pkgmetadata>



1.1                  sci-chemistry/molrep/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/molrep/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/molrep/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-chemistry/molrep
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/ChangeLog,v 1.1 2010/02/06 00:45:50 jlec Exp $

*molrep-10.2.35 (06 Feb 2010)

  06 Feb 2010; Justin Lecher (jlec) <jlec@g.o>
  +files/10.2.35-respect-FLAGS.patch, +molrep-10.2.35.ebuild:
  molrep splitted from ccp4




1.1                  sci-chemistry/molrep/molrep-10.2.35.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/molrep/molrep-10.2.35.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/molrep/molrep-10.2.35.ebuild?rev=1.1&content-type=text/plain

Index: molrep-10.2.35.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molrep/molrep-10.2.35.ebuild,v 1.1 2010/02/06 00:45:50 jlec Exp $

EAPI="3"

inherit base multilib toolchain-funcs

DESCRIPTION="molecular replacement program"
HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html"
SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz
	 test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"

LICENSE="ccp4"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test extra-test"

RDEPEND="
	>=sci-libs/ccp4-libs-6.1.3
	sci-libs/mmdb
	virtual/lapack"
DEPEND="${RDEPEND}"

S="${WORKDIR}/${PN}"

PATCHES=(
	"${FILESDIR}"/${PV}-respect-FLAGS.patch
	)

src_compile() {
	cd "${S}"/src
	emake clean || die
	emake \
		MR_FORT=$(tc-getFC) \
		FFLAGS="${FFLAGS}" \
		LDFLAGS="${LDFLAGS}" \
		MR_LIBRARY="-L${EPREFIX}/usr/$(get_libdir) -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm" \
		|| die
}

src_test() {
	einfo "Starting tests ..."
	export PATH="${WORKDIR}/test-framework/scripts:${S}/bin:${PATH}"
	export CCP4_TEST="${WORKDIR}"/test-framework
	export CCP4_SCR="${T}"
	ccp4-run-thorough-tests -v test_molrep || die "nomal test failed"

	use extra-test && \
		cd "${S}"/molrep_check && \
			ewarn "Can take a long, long time ..." && \
			ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." && \
				sed 's:\.\.:\.:g' -i em.bat && \
				mkdir out && \
				mkdir scr && \
				MR_TEST="${S}/bin" bash em.bat && \
				MR_TEST="${S}/bin" bash mr.bat || \
				die "extra-test failed"
}

src_install() {
	dobin bin/${PN} || die
	dodoc readme doc/${PN}.rtf || die
}