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commit: a5362c2b5a6817a805335c0b3b4d6b883536b668 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Wed Jan 26 10:36:33 2022 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Wed Jan 26 10:36:33 2022 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a5362c2b |
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|
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sci-biology/samri: drop old and live |
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|
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Package-Manager: Portage-3.0.30, Repoman-3.0.3 |
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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sci-biology/samri/samri-0.4.1.ebuild | 58 ----------------------------- |
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sci-biology/samri/samri-9999.ebuild | 71 ------------------------------------ |
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2 files changed, 129 deletions(-) |
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|
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diff --git a/sci-biology/samri/samri-0.4.1.ebuild b/sci-biology/samri/samri-0.4.1.ebuild |
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deleted file mode 100644 |
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index f94119541..000000000 |
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--- a/sci-biology/samri/samri-0.4.1.ebuild |
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+++ /dev/null |
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@@ -1,58 +0,0 @@ |
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-# Copyright 1999-2021 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=7 |
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- |
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-PYTHON_COMPAT=( python3_{7..8} ) |
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- |
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-inherit distutils-r1 prefix |
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- |
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-DESCRIPTION="Small Animal Magnetic Resonance Imaging" |
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-HOMEPAGE="https://github.com/IBT-FMI/SAMRI" |
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-SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" |
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- |
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-LICENSE="GPL-3" |
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-SLOT="0" |
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-IUSE="labbookdb test" |
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-KEYWORDS="~amd64" |
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-RESTRICT="!test? ( test )" |
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- |
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-DEPEND=" |
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- test? ( |
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- dev-python/pytest[${PYTHON_USEDEP}] |
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- sci-biology/samri_bidsdata |
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- sci-biology/samri_bindata |
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- ) |
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-" |
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-RDEPEND=" |
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- dev-python/argh[${PYTHON_USEDEP}] |
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- dev-python/joblib[${PYTHON_USEDEP}] |
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- >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}] |
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- >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] |
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- dev-python/pandas[${PYTHON_USEDEP}] |
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- dev-python/seaborn[${PYTHON_USEDEP}] |
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- dev-python/statsmodels[${PYTHON_USEDEP}] |
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- media-gfx/blender |
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- >=sci-biology/fsl-5.0.9 |
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- sci-biology/bru2nii |
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- sci-biology/mouse-brain-atlases |
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- labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) |
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- sci-libs/nibabel[${PYTHON_USEDEP}] |
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- >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] |
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- >=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}] |
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- <=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}] |
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- sci-libs/scikit-image[${PYTHON_USEDEP}] |
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- dev-python/scipy[${PYTHON_USEDEP}] |
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- sci-biology/ants |
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- sci-biology/afni |
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- sci-biology/nilearn[${PYTHON_USEDEP}] |
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-" |
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- |
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-S="${WORKDIR}/SAMRI-${PV}" |
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- |
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-src_prepare() { |
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- distutils-r1_src_prepare |
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- sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri` |
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- sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` |
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- eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) |
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-} |
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|
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diff --git a/sci-biology/samri/samri-9999.ebuild b/sci-biology/samri/samri-9999.ebuild |
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deleted file mode 100644 |
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index 8dba8864c..000000000 |
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--- a/sci-biology/samri/samri-9999.ebuild |
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+++ /dev/null |
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@@ -1,71 +0,0 @@ |
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-# Copyright 1999-2021 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=7 |
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- |
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-PYTHON_COMPAT=( python3_{7..8} ) |
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- |
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-inherit distutils-r1 prefix git-r3 |
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- |
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-DESCRIPTION="Small Animal Magnetic Resonance Imaging" |
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-HOMEPAGE="https://github.com/IBT-FMI/SAMRI" |
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-SRC_URI="" |
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-EGIT_REPO_URI="https://github.com/IBT-FMI/SAMRI" |
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- |
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-LICENSE="GPL-3" |
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-SLOT="0" |
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-IUSE="+atlases labbookdb test" |
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-KEYWORDS="" |
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-RESTRICT="!test? ( test )" |
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- |
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-DEPEND=" |
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- test? ( |
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- dev-python/pytest[${PYTHON_USEDEP}] |
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- sci-biology/samri_bidsdata |
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- sci-biology/samri_bindata |
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- ) |
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- " |
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-RDEPEND=" |
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- dev-python/argh[${PYTHON_USEDEP}] |
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- dev-python/joblib[${PYTHON_USEDEP}] |
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- >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}] |
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- >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] |
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- dev-python/pandas[${PYTHON_USEDEP}] |
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- dev-python/scipy[${PYTHON_USEDEP}] |
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- dev-python/seaborn[${PYTHON_USEDEP}] |
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- dev-python/statsmodels[${PYTHON_USEDEP}] |
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- >=media-gfx/blender-2.83.4 |
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- >=sci-biology/fsl-5.0.9 |
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- sci-biology/bru2nii |
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- atlases? ( sci-biology/mouse-brain-atlases ) |
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- labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) |
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- sci-libs/nibabel[${PYTHON_USEDEP}] |
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- >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] |
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- >=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}] |
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- sci-libs/pybids[${PYTHON_USEDEP}] |
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- sci-libs/scikit-image[${PYTHON_USEDEP}] |
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- sci-biology/ants |
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- sci-biology/afni |
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- sci-biology/nilearn[${PYTHON_USEDEP}] |
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-" |
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- |
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-REQUIRED_USE="test? ( atlases )" |
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- |
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-src_prepare() { |
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- distutils-r1_src_prepare |
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- sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri` |
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- sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` |
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- eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) |
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-} |
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- |
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-python_test() { |
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- distutils_install_for_testing |
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- export MPLBACKEND="agg" |
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- export PATH=${TEST_DIR}/scripts:$PATH |
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- export PYTHONIOENCODING=utf-8 |
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- ./test_scripts.sh || die "Test scripts failed." |
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- sed -i -e \ |
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- "/def test_bru2bids():/i@×××××××××××.skip('Removed in full test suite, as this is already tested in `test_scripts.sh`')" \ |
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- samri/pipelines/tests/test_repos.py || die |
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- pytest -vv -k "not longtime" || die |
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-} |