| 1 |
commit: 47a650eb48ed78b003f4449f9e7ba775a73ce9cd |
| 2 |
Author: David Seifert <soap <AT> gentoo <DOT> org> |
| 3 |
AuthorDate: Wed Mar 8 21:35:39 2017 +0000 |
| 4 |
Commit: David Seifert <soap <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Wed Mar 8 22:15:56 2017 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=47a650eb |
| 7 |
|
| 8 |
sci-biology/mummer: Remove old |
| 9 |
|
| 10 |
Package-Manager: Portage-2.3.4, Repoman-2.3.2 |
| 11 |
Closes: https://github.com/gentoo/gentoo/pull/4165 |
| 12 |
|
| 13 |
sci-biology/mummer/Manifest | 4 -- |
| 14 |
sci-biology/mummer/files/3.22-ldflags.patch | 16 ----- |
| 15 |
sci-biology/mummer/files/3.22-prll.patch | 56 ---------------- |
| 16 |
sci-biology/mummer/files/mummer-3.20-gcc43.patch | 12 ---- |
| 17 |
sci-biology/mummer/mummer-3.20.ebuild | 57 ---------------- |
| 18 |
sci-biology/mummer/mummer-3.21.ebuild | 52 --------------- |
| 19 |
sci-biology/mummer/mummer-3.22-r1.ebuild | 63 ------------------ |
| 20 |
sci-biology/mummer/mummer-3.9.4_alpha.ebuild | 82 ------------------------ |
| 21 |
8 files changed, 342 deletions(-) |
| 22 |
|
| 23 |
diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest |
| 24 |
index e752ce6907b..53c34cf4516 100644 |
| 25 |
--- a/sci-biology/mummer/Manifest |
| 26 |
+++ b/sci-biology/mummer/Manifest |
| 27 |
@@ -1,5 +1 @@ |
| 28 |
-DIST MUMmer3.20.tar.gz 3155446 SHA256 9c7880b4ce25ef3c6bed9ccdc26f1c4d7e74eb0ef1ce403907790c0f96c0f260 SHA512 7c80bb605d57739809eb1b1cf8a579d72048e510362237d9ba64e21be18cc663769cda5dabc287832e59fb62804df34bc8336c2b42474466e7ee1e126848aecd WHIRLPOOL a08af35aee960bcd6274d3a00b1c1819d23367c81a72fd41c652c3579253b0aeeb5ef66f6dcfed60b4987c3a40830d04cd81745dce8a274cc3de0663dd54ae6f |
| 29 |
-DIST MUMmer3.21.tar.gz 3155965 SHA256 7fb1456c8c21eab4913a522e4b79bc5c84b7373feb54614a7003b16d47dc23b8 SHA512 61d49e5451e1697003f7acaac690f2ede7ab71766208d3218954527c48be76ddb78d60ff40ae1bdcd4b93d3efaf21b5bd027da3722eab1ae3fa399ee726bc96e WHIRLPOOL 50c7b0d7c00bf85aa8e0f8b80bf55186f8c0a53d26c3e50d2149120bc46f3632de4cb861a4d4265c1e3be731dffb71940344b238fd3e977412134b0e401cb95e |
| 30 |
-DIST MUMmer3.22.tar.gz 3156338 SHA256 429022a8c6a7ae55fb1dd94dbdac1b21f662d6278668f5531c735911d9fc77da SHA512 37bbb368c679d2e98fa9b9ef10c18008c173c25ee79183eb30e34125b1dc9cd10f005b7bd7c648335a8025509d8e3456fcc7ce497c95fa71c3c5d3ed3685665f WHIRLPOOL 487333ca38a9c59984ed059e8dd620ad3c0a5ae1a537e500c7b8b2d58213ac88960a13c0f25e6e0490d1209c9e73cfe8df0f8a43dbae9fd6a3e9fe3ce42da453 |
| 31 |
DIST MUMmer3.23.tar.gz 3160143 SHA256 1efad4f7d8cee0d8eaebb320a2d63745bb3a160bb513a15ef7af46f330af662f SHA512 f31d36ef3e07fa4ac017c76c1c8d5f53882a59b061742d201f1f7aafb29d16af8268985285398dd90e98d276b2513d2c611f9876069b23fe82b5da1d3ebc04d3 WHIRLPOOL 7471d20a88f5ddf510d1e4826480706a683f005f3bab21ebb19b1fcba2c8f431435cce27a1cdf98ece8d4bb4dafcc349362037f6d526db3f564b7c013c67e882 |
| 32 |
-DIST mummer-3.9.4_alpha.tar.gz 956517 SHA256 fb2f03c729cd078d526d6318f91061f8832c2e8bd0d519ddf3c0b6e656029cfa SHA512 f0b962a69df6918afc7d163b30bcf5bd9eb2be663c8ac685b5e06317953cf12b9d240df8a5bfe8a9410b65cf88176cc7a71eecfc460e51df7ad1b27dc3a10fc2 WHIRLPOOL 8443cde87f868136eaa005db2b5b461a822097778d4c36448602a5cda058dc1dfa10daa08883248ffaba79a1d33240170b94b96548ebb56a01eaa27838d4afd6 |
| 33 |
|
| 34 |
diff --git a/sci-biology/mummer/files/3.22-ldflags.patch b/sci-biology/mummer/files/3.22-ldflags.patch |
| 35 |
deleted file mode 100644 |
| 36 |
index d3c4a60a1ad..00000000000 |
| 37 |
--- a/sci-biology/mummer/files/3.22-ldflags.patch |
| 38 |
+++ /dev/null |
| 39 |
@@ -1,16 +0,0 @@ |
| 40 |
-diff --git a/src/tigr/Makefile b/src/tigr/Makefile |
| 41 |
-index cf6b9ca..5b28d1e 100644 |
| 42 |
---- a/src/tigr/Makefile |
| 43 |
-+++ b/src/tigr/Makefile |
| 44 |
-@@ -9,9 +9,9 @@ AUX_BIN_DIR := $(CURDIR) |
| 45 |
- endif |
| 46 |
- |
| 47 |
- OBJ_RULE = $(CXX) $(CXXFLAGS) $< -c -o $@ |
| 48 |
--BIN_RULE = $(CXX) $(CXXFLAGS) $^ -o $(BIN_DIR)/$@; \ |
| 49 |
-+BIN_RULE = $(CXX) $(LDFLAGS) $(CXXFLAGS) $^ -o $(BIN_DIR)/$@; \ |
| 50 |
- chmod 755 $(BIN_DIR)/$@ |
| 51 |
--AUX_BIN_RULE = $(CXX) $(CXXFLAGS) $^ -o $(AUX_BIN_DIR)/$@; \ |
| 52 |
-+AUX_BIN_RULE = $(CXX) $(LDFLAGS) $(CXXFLAGS) $^ -o $(AUX_BIN_DIR)/$@; \ |
| 53 |
- chmod 755 $(AUX_BIN_DIR)/$@ |
| 54 |
- VPATH := $(AUX_BIN_DIR):$(BIN_DIR) |
| 55 |
- |
| 56 |
|
| 57 |
diff --git a/sci-biology/mummer/files/3.22-prll.patch b/sci-biology/mummer/files/3.22-prll.patch |
| 58 |
deleted file mode 100644 |
| 59 |
index 3b24ee40214..00000000000 |
| 60 |
--- a/sci-biology/mummer/files/3.22-prll.patch |
| 61 |
+++ /dev/null |
| 62 |
@@ -1,56 +0,0 @@ |
| 63 |
-diff --git a/Makefile b/Makefile |
| 64 |
-index 4db4977..bbd00ed 100644 |
| 65 |
---- a/Makefile |
| 66 |
-+++ b/Makefile |
| 67 |
-@@ -114,15 +114,15 @@ install: all |
| 68 |
- |
| 69 |
- |
| 70 |
- kurtz: |
| 71 |
-- cd $(KURTZ_SRC_DIR); $(MAKE) mummer |
| 72 |
-+ $(MAKE) -C $(KURTZ_SRC_DIR) mummer |
| 73 |
- |
| 74 |
- |
| 75 |
- scripts: |
| 76 |
-- cd $(SCRIPT_DIR); $(MAKE) all |
| 77 |
-+ $(MAKE) -C $(SCRIPT_DIR) all |
| 78 |
- |
| 79 |
- |
| 80 |
- tigr: |
| 81 |
-- cd $(TIGR_SRC_DIR); $(MAKE) all |
| 82 |
-+ $(MAKE) -C $(TIGR_SRC_DIR) all |
| 83 |
- |
| 84 |
- |
| 85 |
- uninstall: clean |
| 86 |
-diff --git a/src/kurtz/Makefile b/src/kurtz/Makefile |
| 87 |
-index 85dfc16..5bff793 100644 |
| 88 |
---- a/src/kurtz/Makefile |
| 89 |
-+++ b/src/kurtz/Makefile |
| 90 |
-@@ -1,7 +1,7 @@ |
| 91 |
- all: |
| 92 |
-- cd libbasedir; $(MAKE) all |
| 93 |
-- cd streesrc; $(MAKE) all |
| 94 |
-- cd mm3src; $(MAKE) all |
| 95 |
-+ $(MAKE) -C libbasedir all |
| 96 |
-+ $(MAKE) -C streesrc all |
| 97 |
-+ $(MAKE) -C mm3src all |
| 98 |
- |
| 99 |
- clean: |
| 100 |
- rm -f *~ |
| 101 |
-@@ -10,11 +10,11 @@ clean: |
| 102 |
- cd mm3src; $(MAKE) clean |
| 103 |
- |
| 104 |
- mummer: |
| 105 |
-- cd libbasedir; $(MAKE) libbase.a |
| 106 |
-- cd streesrc; $(MAKE) libstree.a |
| 107 |
-- cd mm3src; $(MAKE) mummer |
| 108 |
-+ $(MAKE) -C libbasedir libbase.a |
| 109 |
-+ $(MAKE) -C streesrc libstree.a |
| 110 |
-+ $(MAKE) -C mm3src mummer |
| 111 |
- |
| 112 |
- splintall: |
| 113 |
-- cd libbasedir; ${MAKE} splintall |
| 114 |
-- cd streesrc; ${MAKE} splintall |
| 115 |
-- cd mm3src; ${MAKE} splintall |
| 116 |
-+ $(MAKE) -C libbasedir splintall |
| 117 |
-+ $(MAKE) -C streesrc splintall |
| 118 |
-+ $(MAKE) -C mm3src splintall |
| 119 |
|
| 120 |
diff --git a/sci-biology/mummer/files/mummer-3.20-gcc43.patch b/sci-biology/mummer/files/mummer-3.20-gcc43.patch |
| 121 |
deleted file mode 100644 |
| 122 |
index 4d3edb41e46..00000000000 |
| 123 |
--- a/sci-biology/mummer/files/mummer-3.20-gcc43.patch |
| 124 |
+++ /dev/null |
| 125 |
@@ -1,12 +0,0 @@ |
| 126 |
---- src/tigr/show-diff.cc.orig 2008-06-16 17:55:34.000000000 +0000 |
| 127 |
-+++ src/tigr/show-diff.cc 2008-06-16 17:56:25.000000000 +0000 |
| 128 |
-@@ -14,6 +14,8 @@ |
| 129 |
- #include <cstdlib> |
| 130 |
- #include <cassert> |
| 131 |
- #include <climits> |
| 132 |
-+#include <algorithm> |
| 133 |
-+ |
| 134 |
- using namespace std; |
| 135 |
- |
| 136 |
- |
| 137 |
- |
| 138 |
|
| 139 |
diff --git a/sci-biology/mummer/mummer-3.20.ebuild b/sci-biology/mummer/mummer-3.20.ebuild |
| 140 |
deleted file mode 100644 |
| 141 |
index 737e6d6aa64..00000000000 |
| 142 |
--- a/sci-biology/mummer/mummer-3.20.ebuild |
| 143 |
+++ /dev/null |
| 144 |
@@ -1,57 +0,0 @@ |
| 145 |
-# Copyright 1999-2009 Gentoo Foundation |
| 146 |
-# Distributed under the terms of the GNU General Public License v2 |
| 147 |
- |
| 148 |
-inherit eutils |
| 149 |
- |
| 150 |
-MY_P="MUMmer${PV}" |
| 151 |
-DESCRIPTION="A rapid whole genome aligner" |
| 152 |
-HOMEPAGE="http://mummer.sourceforge.net/" |
| 153 |
-SRC_URI="mirror://sourceforge/mummer/${MY_P}.tar.gz" |
| 154 |
- |
| 155 |
-LICENSE="Artistic" |
| 156 |
-SLOT="0" |
| 157 |
-IUSE="doc" |
| 158 |
-KEYWORDS="amd64 x86" |
| 159 |
- |
| 160 |
-DEPEND="" |
| 161 |
-RDEPEND="app-shells/tcsh" |
| 162 |
- |
| 163 |
-S="${WORKDIR}/${MY_P}" |
| 164 |
- |
| 165 |
-src_unpack() { |
| 166 |
- unpack ${A} |
| 167 |
- cd "${S}" |
| 168 |
- epatch "${FILESDIR}"/${P}-gcc43.patch |
| 169 |
- # Warning: package uses CPPFLAGS on c in addition to cpp, despite the name |
| 170 |
- sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ |
| 171 |
- -e 's/LDFLAGS =$//' "${S}/Makefile" |
| 172 |
-} |
| 173 |
- |
| 174 |
-src_compile() { |
| 175 |
- emake || die "emake failed" |
| 176 |
- |
| 177 |
- sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| 178 |
- -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| 179 |
- -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| 180 |
- -e 's|\(set bindir = \).*|\1/usr/bin|' \ |
| 181 |
- -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ |
| 182 |
- -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| 183 |
- scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die "Failed to replace paths" |
| 184 |
- sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh |
| 185 |
-} |
| 186 |
- |
| 187 |
-src_install() { |
| 188 |
- dobin nucmer2xfig show-coords mapview show-snps run-mummer{1,3} \ |
| 189 |
- exact-tandems promer repeat-match show-aligns gaps mummer \ |
| 190 |
- show-tiling mgaps nucmer mummerplot delta-filter combineMUMs aux_bin/* || die |
| 191 |
- newbin annotate mummer-annotate || die |
| 192 |
- |
| 193 |
- insinto /usr/share/${PN}/scripts |
| 194 |
- doins scripts/{*.awk,*.csh,*.pl} |
| 195 |
- insinto /usr/share/${PN}/lib |
| 196 |
- doins scripts/Foundation.pm || die |
| 197 |
- |
| 198 |
- dodoc ACKNOWLEDGEMENTS ChangeLog README |
| 199 |
- insinto /usr/share/doc/${PF} |
| 200 |
- use doc && doins -r docs |
| 201 |
-} |
| 202 |
|
| 203 |
diff --git a/sci-biology/mummer/mummer-3.21.ebuild b/sci-biology/mummer/mummer-3.21.ebuild |
| 204 |
deleted file mode 100644 |
| 205 |
index e9faee09eea..00000000000 |
| 206 |
--- a/sci-biology/mummer/mummer-3.21.ebuild |
| 207 |
+++ /dev/null |
| 208 |
@@ -1,52 +0,0 @@ |
| 209 |
-# Copyright 1999-2009 Gentoo Foundation |
| 210 |
-# Distributed under the terms of the GNU General Public License v2 |
| 211 |
- |
| 212 |
-inherit eutils |
| 213 |
- |
| 214 |
-DESCRIPTION="A rapid whole genome aligner" |
| 215 |
-HOMEPAGE="http://mummer.sourceforge.net/" |
| 216 |
-SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" |
| 217 |
- |
| 218 |
-LICENSE="Artistic" |
| 219 |
-SLOT="0" |
| 220 |
-IUSE="doc" |
| 221 |
-KEYWORDS="amd64 x86" |
| 222 |
- |
| 223 |
-DEPEND="" |
| 224 |
-RDEPEND="app-shells/tcsh" |
| 225 |
- |
| 226 |
-S="${WORKDIR}/MUMmer${PV}" |
| 227 |
- |
| 228 |
-src_unpack() { |
| 229 |
- unpack ${A} |
| 230 |
- # Warning: package uses CPPFLAGS on c as well as cpp, despite the name |
| 231 |
- sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ |
| 232 |
- -e 's/LDFLAGS =$//' "${S}/Makefile" || die |
| 233 |
-} |
| 234 |
- |
| 235 |
-src_compile() { |
| 236 |
- emake || die |
| 237 |
- |
| 238 |
- sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| 239 |
- -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| 240 |
- -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| 241 |
- -e 's|\(set bindir = \).*|\1/usr/bin|' \ |
| 242 |
- -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ |
| 243 |
- -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| 244 |
- scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die |
| 245 |
- mv annotate mummer-annotate || die |
| 246 |
- sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die |
| 247 |
-} |
| 248 |
- |
| 249 |
-src_install() { |
| 250 |
- dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die |
| 251 |
- |
| 252 |
- insinto /usr/share/${PN}/scripts |
| 253 |
- doins scripts/{*.awk,*.csh,*.pl} || die |
| 254 |
- insinto /usr/share/${PN}/lib |
| 255 |
- doins scripts/Foundation.pm || die |
| 256 |
- |
| 257 |
- dodoc ACKNOWLEDGEMENTS ChangeLog README |
| 258 |
- insinto /usr/share/doc/${PF} |
| 259 |
- use doc && doins -r docs |
| 260 |
-} |
| 261 |
|
| 262 |
diff --git a/sci-biology/mummer/mummer-3.22-r1.ebuild b/sci-biology/mummer/mummer-3.22-r1.ebuild |
| 263 |
deleted file mode 100644 |
| 264 |
index f9caede7641..00000000000 |
| 265 |
--- a/sci-biology/mummer/mummer-3.22-r1.ebuild |
| 266 |
+++ /dev/null |
| 267 |
@@ -1,63 +0,0 @@ |
| 268 |
-# Copyright 1999-2011 Gentoo Foundation |
| 269 |
-# Distributed under the terms of the GNU General Public License v2 |
| 270 |
- |
| 271 |
-EAPI="3" |
| 272 |
- |
| 273 |
-inherit eutils flag-o-matic |
| 274 |
- |
| 275 |
-DESCRIPTION="A rapid whole genome aligner" |
| 276 |
-HOMEPAGE="http://mummer.sourceforge.net/" |
| 277 |
-SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" |
| 278 |
- |
| 279 |
-LICENSE="Artistic" |
| 280 |
-SLOT="0" |
| 281 |
-IUSE="doc" |
| 282 |
-KEYWORDS="amd64 x86" |
| 283 |
- |
| 284 |
-DEPEND="" |
| 285 |
-RDEPEND="app-shells/tcsh" |
| 286 |
- |
| 287 |
-S="${WORKDIR}/MUMmer${PV}" |
| 288 |
- |
| 289 |
-src_prepare() { |
| 290 |
- use amd64 && append-flags -DSIXTYFOURBITS |
| 291 |
- |
| 292 |
- epatch \ |
| 293 |
- "${FILESDIR}"/${PV}-prll.patch \ |
| 294 |
- "${FILESDIR}"/${PV}-ldflags.patch |
| 295 |
- |
| 296 |
- sed \ |
| 297 |
- -e '/^CFLAGS/d' \ |
| 298 |
- -e '/^CXXFLAGS/d' \ |
| 299 |
- -e '/^LDFLAGS/d' \ |
| 300 |
- -i Makefile || die |
| 301 |
-} |
| 302 |
- |
| 303 |
-src_compile() { |
| 304 |
- emake || die |
| 305 |
- |
| 306 |
- sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| 307 |
- -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ |
| 308 |
- -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| 309 |
- -e 's|\(set bindir = \).*|\1/usr/bin|' \ |
| 310 |
- -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ |
| 311 |
- -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ |
| 312 |
- scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die |
| 313 |
- mv annotate mummer-annotate || die |
| 314 |
- sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die |
| 315 |
-} |
| 316 |
- |
| 317 |
-src_install() { |
| 318 |
- dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die |
| 319 |
- |
| 320 |
- insinto /usr/share/${PN}/scripts |
| 321 |
- doins scripts/{*.awk,*.csh,*.pl} || die |
| 322 |
- insinto /usr/share/${PN}/lib |
| 323 |
- doins scripts/Foundation.pm || die |
| 324 |
- |
| 325 |
- dodoc ACKNOWLEDGEMENTS ChangeLog README || die |
| 326 |
- insinto /usr/share/doc/${PF} |
| 327 |
- if use doc; then |
| 328 |
- doins -r docs || die |
| 329 |
- fi |
| 330 |
-} |
| 331 |
|
| 332 |
diff --git a/sci-biology/mummer/mummer-3.9.4_alpha.ebuild b/sci-biology/mummer/mummer-3.9.4_alpha.ebuild |
| 333 |
deleted file mode 100644 |
| 334 |
index 2865c3d9b2e..00000000000 |
| 335 |
--- a/sci-biology/mummer/mummer-3.9.4_alpha.ebuild |
| 336 |
+++ /dev/null |
| 337 |
@@ -1,82 +0,0 @@ |
| 338 |
-# Copyright 1999-2017 Gentoo Foundation |
| 339 |
-# Distributed under the terms of the GNU General Public License v2 |
| 340 |
- |
| 341 |
-EAPI=6 |
| 342 |
- |
| 343 |
-PYTHON_COMPAT=( python{2_7,3_4,3_5} ) |
| 344 |
- |
| 345 |
-inherit perl-functions python-r1 toolchain-funcs |
| 346 |
- |
| 347 |
-MY_PV=${PV//_/} |
| 348 |
- |
| 349 |
-DESCRIPTION="A rapid whole genome aligner" |
| 350 |
-HOMEPAGE="http://mummer.sourceforge.net/" |
| 351 |
-SRC_URI="https://github.com/gmarcais/${PN}/releases/download/v${MY_PV}/${PN}-${MY_PV}.tar.gz -> ${P}.tar.gz" |
| 352 |
- |
| 353 |
-LICENSE="Artistic" |
| 354 |
-SLOT="0" |
| 355 |
-IUSE="openmp perl python" |
| 356 |
-KEYWORDS="~amd64 ~x86" |
| 357 |
- |
| 358 |
-DEPEND=" |
| 359 |
- python? ( |
| 360 |
- ${PYTHON_DEPS} |
| 361 |
- dev-lang/swig:0 |
| 362 |
- )" |
| 363 |
-RDEPEND=" |
| 364 |
- app-shells/tcsh |
| 365 |
- dev-lang/perl:= |
| 366 |
- python? ( ${PYTHON_DEPS} )" |
| 367 |
- |
| 368 |
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" |
| 369 |
- |
| 370 |
-S=${WORKDIR}/${PN}-${MY_PV} |
| 371 |
- |
| 372 |
-pkg_pretend() { |
| 373 |
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp |
| 374 |
-} |
| 375 |
- |
| 376 |
-pkg_setup() { |
| 377 |
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp |
| 378 |
- use python && preamble="python_foreach_impl run_in_build_dir" |
| 379 |
-} |
| 380 |
- |
| 381 |
-src_configure() { |
| 382 |
- perl_set_version |
| 383 |
- configure() { |
| 384 |
- local pythonconf |
| 385 |
- if use python; then |
| 386 |
- pythonconf="--enable-python-binding=$(python_get_sitedir)" |
| 387 |
- else |
| 388 |
- pythonconf="--disable-python-binding" |
| 389 |
- fi |
| 390 |
- |
| 391 |
- ECONF_SOURCE="${S}" econf \ |
| 392 |
- --disable-static \ |
| 393 |
- --disable-ruby-binding \ |
| 394 |
- $(use_enable perl perl-binding "${VENDOR_LIB}") \ |
| 395 |
- $(use_enable openmp) \ |
| 396 |
- $(use_enable python swig) \ |
| 397 |
- "${pythonconf}" |
| 398 |
- } |
| 399 |
- ${preamble} configure |
| 400 |
-} |
| 401 |
- |
| 402 |
-src_compile() { |
| 403 |
- ${preamble} default |
| 404 |
-} |
| 405 |
- |
| 406 |
-src_install() { |
| 407 |
- ${preamble} default |
| 408 |
- einstalldocs |
| 409 |
- |
| 410 |
- # avoid file collision |
| 411 |
- mv "${ED%/}"/usr/bin/{,mummer-}annotate || die |
| 412 |
- |
| 413 |
- # move perl module into right place |
| 414 |
- mkdir -p "${D%/}${VENDOR_LIB}" || die |
| 415 |
- mv "${ED%/}"/usr/$(get_libdir)/mummer/Foundation.pm "${D%/}${VENDOR_LIB}" || die |
| 416 |
- |
| 417 |
- # no static libs, can purge .la files |
| 418 |
- find "${D}" -name '*.la' -delete || die |
| 419 |
-} |
Archives